At1g20960 SYNGENTA 84939
Genomic Sequence (from TAIR)
aagcatgagaccattgtcttattacgttgggcttaggaagtatgtacaggcccagcccaatccatgtacagagtcggtttcgttattggatccatagttt caaaacggcatcgttaaagttttccaccttaaggcggtatcgctagcttatagaaagaattcgcagtcgaataaacgaaggagtgtctcctttagtcatt taggtcgattattaggagatagaggacgtgagaagggagagatctgagtctcctactagggtttcttctactggattgattcgttgcagagagtgaagct aagaagagattttcgtagctgtttctgtaagttttttttaatctccgtttcctcgatttgggtgtggttttattagggtttatcatctctgggagcttct tcgtttcacttttggttcgtttcttcgatttgaggttaacattgtgtatttttttttgttcctgtttgatttggtttctaggttttcggattggtagATG GCGAACTTGGGAGGCGGTGCGGAAGCACATGCCAGGTTCAAGCAGTATGAGTACAGAGCCAATTCTAGTCTGGTGTTAACTACTGATAATAGACCTCGGG ATACTCATGAGCCTACAGGAGAACCGGAAACTCTGTGGGGGAAAATCGATCCGAGGTCTTTTGGTGACCGTGTTGCTAAGGGAAGGCCTCAGGAGTTGGA GGATAAGCTGAAAAAGTCTAAGAAGAAGGAACGTGATGTTGTAGATGATATGGTAAATATTAGGCAGAGTAAGAGGCGGCGTCTAAGGGAAGAGAGTGTG CTGACTGATACTGATGATGCGGTTTATCAGCCGAAGACTAAGGAGACGAGGGCTGCTTATGAAGCCATGCTTGGTCTTATCCAGAAGCAGTTGGGTGGGC AACCTCCGAGTATTGTTAGTGGTGCAGCGGATGAGATTTTGGCTGTTCTCAAGAATGACGCATTTAGAAACCCTGAGAAAAAGATGGAGATTGAGAAGTT GCTGAACAAGATTGAAAACCATGAGTTTGATCAGCTTGTTTCCATTGGAAAGTTAATCACGGACTTCCAAGAGGGTGGTGATTCTGGTGGTGGTAGAGCT AATGATGATGAAGGGCTTGATGATGATTTGGGCGTGGCTGTTGAATTTGAGGAGAATGAAGAAGATGATGAGGAAAGCGATCCTGATATGGTTGAAGAGG ATGATGATGAGGAGGATGATGAGCCTACCAGAACTGGAGGCATGCAGGTTGATGCAGGGATAAATGATGAGGATGCAGGAGATGCCAATGAGGGCACAAA TCTTAATGTTCAAGACATTGATGCATATTGGCTCCAGAGAAAGATCTCTCAAGCGTATGAACAGCAGATTGATCCACAACAATGCCAGGTACTCGCAGAA GAGCTACTAAAGATACTCGCTGAAGGGGATGATAGGGTTGTTGAGGACAAGCTGCTTATGCACCTTCAGTACGAAAAATTTAGCCTTGTCAAGTTTCTGC TGCGTAACCGTCTTAAAGTTGTGTGGTGCACTCGTTTGGCTAGGGCAGAAGACCAGGAAGAGAGGAATAGAATCGAGGAGGAGATGAGGGGGTTAGGCCC AGAGTTGACAGCAATTGTGGAGCAGTTGCATGCAACAAGAGCAACAGCGAAAGAGAGGGAGGAGAACCTGCAAAAAAGTATTAACGAGGAAGCCCGGCGT TTGAAGGACGAAACTGGTGGAGATGGAGGCAGAGGCAGGAGAGATGTTGCTGATAGAGATTCAGAGAGTGGGTGGGTGAAGGGTCAGCGTCAGATGCTGG ACCTGGAGAGCTTGGCTTTTGACCAAGGTGGTCTTCTGATGGCGAATAAGAAGTGTGACCTCCCCCCTGGCTCTTACAGAAGTCATGGCAAGGGATATGA TGAAGTTCATGTGCCTTGGGTTTCTAAAAAGGTTGATAGGAATGAGAAGCTAGTGAAGATTACGGAAATGCCTGATTGGGCGCAACCGGCTTTTAAGGGA ATGCAACAGTTGAACAGGGTTCAGAGCAAAGTGTATGACACTGCGCTTTTCAAGGCAGAGAATATTCTTCTTTGTGCTCCAACTGGTGCTGGGAAAACCA ATGTTGCTATGCTCACCATACTGCAGCAACTTGAAATGAATAGGAACACAGATGGAACTTATAACCATGGAGATTACAAAATTGTCTATGTTGCACCCAT GAAAGCCCTTGTTGCTGAAGTTGTAGGTAATTTGTCTAATCGTCTGAAGGATTATGGAGTTATTGTGAGAGAACTCAGTGGGGATCAGTCCCTAACCGGA AGAGAAATTGAAGAGACTCAGATAATTGTTACAACACCAGAGAAATGGGATATCATCACTAGGAAGTCTGGAGACCGAACTTATACTCAGCTTGTGAGAC TTCTTATAATTGATGAAATTCATCTCCTTCATGACAATCGAGGGCCTGTGCTTGAAAGCATTGTTGCTAGGACTCTTAGGCAAATTGAAACCACGAAAGA GAATATTCGTCTGGTTGGTTTATCTGCTACATTGCCAAATTATGAAGACGTGGCCTTATTTTTGCGGGTTGATCTTAAGAAAGGTTTGTTTAAATTTGAC CGCAGCTACAGACCCGTGCCTCTCCATCAGCAGTATATTGGAATCAGTGTGAAGAAACCGTTGCAGAGGTTCCAGTTGATGAATGATCTTTGTTATCAGA AAGTATTGGCTGGTGCTGGAAAGCACCAGGTCCTTATTTTTGTTCATTCAAGGAAGGAAACATCAAAAACTGCTAGAGCAATAAGGGACACTGCAATGGC GAACGA◄TACCCT►CAGCAG►ATTCTTGAAGGAAGATAGTGTAACTCGTGACGTTCTCCATAGTCATGAAGACATTGTTAAGAATAGTGACCTAAAAGAT ATTCTGCCTTACGGTTTTGCAATTCATCATGCTGGGTTATCAAGGGGTGATCGTGAGATTGTTGAGACTCTTTTTTCTCAGGGGCATGTGCAAGTCTTGG TTTCCACAGCAACTCTCGCATGGGGTGTGAATCTGCCTGCACATACCGTAATTATAAAAGGAACCCAGGTGTATAATCCTGAAAAAGGGGCGTGGATGGA GCTGAGTCCTCTAGATGTTATGCAGATGCTTGGTCGTGCTGGAAGACCTCAGTATGATCAACATGGGGAGGGTATAATTATAACTGGCTACAGCGAGCTG CAATATTATCTTTCTTTGATGAATGAGCAACTACCTATTGAAAGCCAGTTTATTTCCAAACTTGCTGATCAGCTTAATGCTGAAATTGTGCTTGGAACCG TTCAGAATGCTAGAGAGGCTTGCCATTGGCTTGGTTACACGTATTTGTATATCCGTATGGTTCGTAATCCAACGTTGTATGGCTTAGCGCCTGATGCCCT TGCAAAAGACGTAGTTTTGGAGGAGAGAAGAGCTGACCTGgtacggaatttgttcatctgcataaattttggcttttgctatctactgtcacattatttt tctatagttaaatgcccataaatactatgcctagtatctgaagctttcatacagcctactattatgcagcctgtgattaattgtgcgtattttttatcac tgctctgaaagttacttttatttgtgttaatattcttagtgaagagtttgtaacgctctttcatatagtatcattgcccctaaatattatgcctagcatc agtagctttgcctccgtgattaactgttgggatcacttgtgcatcatcatgtactgttgggatcacttgtgcatcatcatgttgattactaatctagtaa cagaaatttctttttgagtattttgaatggggagtatgtacctgattatttaattttatttctctgaaaatgacgtttatttatttgatatcatttccca taaataatgttcctagtgtcagtagctttctcactgtctattacatgcaatcaatgatgaactgtttggtgtttgccttgtcttcttcaagttgatgaca gattagtatttcatatatctttttgagatttccgaacaatgagtttgcattcggttatgtaatatcattgttctaaagtttcatatatcattgatccttt aatggcgagctgtgtctaatatttgcttgaatccttgtttttgcagATACATTCGGCTGCTACTATCTTGGACAAAAACAACTTGGTTAAGTATGACAGG AAAAGTGGATACTTCCAAGTTACAGATTTGGGACGCATAGCAAGCTACTATTACATAACCCATGGGACCATAGCTACATACAATGAGCATTTGAAGCCAA CAATGGGTGATATAGATCTTTATCGTCTGTTCTCCCTGAGTGACGAGTTCAAGTATGTGACTGTTCGGCAAGATGAGAAGATGGAACTGGCGAAACTTTT GGATCGTGTCCCAATTCCGATCAAGGAAACTTTGGAGGAGCCCAGTGCCAAAATAAATGTATTGCTGCAGGCATATATTTCACAGCTAAAGCTTGAGGGT CTTTCTTTGACATCTGACATGGTTTACATTACGCAGgtttgttctacactttcttctctcgtcccttctagttacattgataaattagctgtatctattt tctgatacttatatttcgttcctttctatcatttttagAGTGCTGGACGTCTTGTGCGAGCTCTTTATGAAATTGTATTGAAGCGGGGATGGGCTCAATT GGCAGAGAAGGCTCTGAACTTGTCTAAAATGGTAGGGAAGAGGATGTGGAGTGTTCAGACACCCCTGCGTCAGTTTCATGGACTCTCCAATGATATTTTG ATGCAGTTGGAGAAGAAGGATTTGGTGTGGGAGAGGTACTATGATCTATCCGCACAGGAGCTAGGAGAGCTTATTCGCAGTCCTAAGATGGGCAAGCCGC TTCACAAGTTCATTCACCAGTTCCCAAAAGTGACTCTTTCTGCACATGTTCAGCCTATTACTCGCACTGTTCTGAATGTGGAGCTTACAGTTACACCTGA TTTCCTGTGGGACGAGAAAATTCATAAATATGTTGAGCCGTTTTGGATAATTGTGGAAGACAATGATGGTGAAAAGATCCTTCATCACGAGTATTTTCTT TTGAAGAAGCAGTATATTGATGAGGATCACACTTTGCACTTCACTGTGCCAATTTTTGAACCGTTGCCACCTCAGTATTTTGTTCGAGTGGTTTCAGACA AGTGGCTTGGCTCGGAGACTGTGTTGCCTGTATCTTTCAGGCATCTTATTCTTCCAGAGAAGTATCCACCTCCGACAGAGTTACTGGACTTGCAACCTCT CCCAGTGACGGCGCTAAGGAATCCGAATTATGAGATACTCTATCAGGATTTCAAGCATTTCAATCCAGTGCAGACTCAGGTCTTTACTGTTTTGTATAAC ACTAACGACAATGTGTTGGTTGCTGCTCCAACGGGAAGTGGGAAAACTATTTGTGCGGAGTTCGCTATTTTGAGGAATCATCATGAAGGACCTGATGCTA CAATGCGTGTTGTTTATATTGCACCACTTGAGGCTATTGCCAAGGAGCAGTTTCGTATCTGGGAGGGGAAGTTTGGGAAGGGTCTTGGTTTACGGGTTGT TGAGCTAACTGGGGAGACAGCATTGGATCTTAAGCTGCTTGAGAAAGGCCAGATAATCATAAGTACTCCTGAGAAATGGGATGCTCTTTCCCGCAGGTGG AAACAGAGAAAATATGTTCAACAAGTTAGTCTTTTCATCGTCGACGAACTCCATCTAATTGGAGGTCAACATGGTCCAGTGTTGGAGGTAATCGTTTCCA GAATGAGATATATTTCAAGTCAGGTCATTAATAAGATCAGGATTGTTGCGCTATCCACTTCGCTTGCAAATGCAAAAGATCTTGGGGAGTGGATTGGGGC CAGTTCCCACGGCCTTTTCAACTTCCCTCCCGGAGTCCGTCCTGTTCCACTGGAGATCCACATTCAGGGAGTGGATATATCCAGTTTTGAAGCCAGGATG CAGGCGATGACCAAACCAACCTACACCGCCATAGTTCAGCACGCCAAGAACAAGAAGCCGGCTATTGTTTTCGTCCCAACCCGTAAACATGTCCGCTTGA CTGCTGTGGATCTGATGGCTTATTCTCACATGGATAACCCGCAGAGTCCTGATTTCTTGTTAGGGAAGCTGGAAGAACTGGACCCTTTTGTTGAACAAAT CCGCGAGGAAACACTGAAGGAGACACTGTGTCATGGTATTGGATACTTGCATGAGGGTTTAAGCAGTCTGGATCAGGAGATTGTGACACAGCTCTTTGAA GCTGGACGGATTCAGGTTTGTGTGATGAGCAGTTCATTGTGTTGGGGCACTCCATTAACTGCGCATTTGGTGGTCGTAATGGGAACGCAGTATTACGATG GGAGGGAAAATTCACATTCTGATTATCCAGTCCCTGATCTGCTTCAGATGATGGGGCGTGCTAGCCGACCACTTCTTGACAATGCCGGGAAGTGTGTGAT CTTTTGTCATGCACCGCGGAAGGAGTATTACAAGAAGTTTTTGTACGAAGCCTTCCCTGTGGAAAGTCAGCTCCAGCATTTCTTGCATGATAATTTCAAC GCAGAAGTGGTTGCTGGGGTTATAGAGAACAAGCAAGATGCCGTGGATTATCTTACATGGACTTTCATGTACAGGAGGCTTCCCCAGAACCCTAACTACT ACAATCTCCAAGGTGTTAGCCACAGGCATTTGTCTGATCACCTATCAGAGCTGGTTGAGAACACCTTGTCTGATCTTGAAGCCAGTAAATGCATTGAGGT AGAGGATGAGATGGAACTCTCTCCTCTCAACCTTGGTATGATTGCATCCTATTATTACATCAGTTATACCACCATTGAGCGCTTCAGTTCACTGTTGTCT TCTAAAACCAAGATGAAGGGACTTCTTGAAATCTTAACATCGGCTTCAGAGTATGACATGATTCCTATACGGCCTGGCGAAGAGGACACCGTTCGAAGAT TAATCAATCACCAGAGGTTCTCTTTTGAAAACCCAAAATGCACAGACCCTCATGTGAAGGCAAACGCGCTTCTTCAGGCGCATTTCTCAAGGCAAAACAT TGGCGGGAACTTGGCAATGGATCAGCGTGATGTCCTTCTATCTGCAACCAGACTTCTTCAAGCGATGGTCGATGTGATATCAAGCAATGGCTGGCTGAAT CTTGCTCTGCTAGCTATGGAAGTAAGCCAGATGGTGACTCAAGGCATGTGGGAGCGGGACTCCATGCTTCTGCAGCTCCCTCACTTCACAAAAGACTTGG CCAAGAGGTGCCAGGAGAATCCAGGGAAAAACATTGAAACCGTATTCGATCTTGTGGAGATGGAGGATGAAGAACGCCAAGAGCTTCTCAAGATGTCAGA CGCTCAGCTTCTAGACATTGCCAGATTCTGCAACCGCTTCCCAAACATCGACCTTACTTACGAGATTGTGGGCAGTGAAGAGGTGAACCCAGGGAAAGAG GTTACATTGCAAGTGATGCTTGAGAGAGACATGGAGGGGAGGACAGAAGTGGGACCTGTGGATTCACTGAGGTATCCCAAGACCAAAGAAGAAGGATGGT GGCTGGTCGTGGGCGACACCAAGACAAACCAGTTGCTGGCAATCAAGCGTGTCTCATTGCAACGGAAAGTGAAGGTGAAGCTGGATTTCACAGCACCGAG TGAACCAGGAGAGAAGTCATACACACTATACTTCATGTGTGACTCTTACTTGGGGTGTGACCAAGAGTACTCGTTCTCTGTTGATGTCAAAGGATCCGGC GCTGGAGATCGCATGGAAGAATGAtttgttattcaggttagttccacagttttctggtcatagttttcggatttagattctgtacatggttgtagttttt gtgttacgaacttggctttactagattctgctatgtgcattgaccaactcgctttcatctattgtttgagtaatttgttcatcaatctgctatttttctg tttcgtctgttttctttttgcatgagctatgtattaggttttactcttgagcattgatttacttatctaggtattagaatacaggtatgctcatggtata tatatacctagtattgtgaaatgattgattgataagttagtgaacaatgttgatcagcaaattgttagaaatctgtataattggatggtgatttgatgtg tgctttggatggtgatttgatatgtgtgcatcactgctatatgaaaactgctttcttgaatcatgtctcataaaaatctcacatgatgttcctttaaaat agc
Border_1 (84939_LB1D)
AATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATACACCAAATCAATTAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTT
ATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATTCGTTCGCCATTGCAGTGTCCCTTATTGCTCTAGCAGTTTTTGATGTTTCCTTCCTTGAATG
AACAAAAATAAGGACCTGGTGCTTTCCAGCACCAGCCAATACTTTCTGATAACAAAGATCATTCATCAACTGGAACCTCTGCAACGGTTTCTTCACACCT
GATTCCAATATACTGCTGATGGAGAGGCACGGGTCTGTAGCTGCGGTCAAATTTAAACAAACCTTTCTTAAGATCAACCCGCAAAAATAAGGCCACGTCT
TCATAATTTGGCAATGTAGCAGATAAACCAACCAGACGAATATTCTCTTTCGTGGGTTCAATTTGCCTAAGAGTCCTAGCAACAATGCTTTCAAGCACAG
GCCCTCGATTGTCATGAAGGAGATGAATTTCATCAATTATAAGAAGTCTCACAAGCTGAGTATAAGTTCGGCCTCCAGACTTCCTAGTGATGATATCCCA
TTTCTCTGGTGTTGTAACAATTATCTGAGTCTCTTCAATTTNTCTTNCGGTTAGGGACTGATCCCCACT
| Start of BLAST Alignment: | NT 2309 /Exon 1 of 3 |
| First 15 bp Perfect Match: | NT 2309 /Exon 1 of 3 |
BLAST Details: Query Sequence: 84939_LB1D Length: (669 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g20960 68414.t02350 U5 small nuclear ribonucleoprotein... 2608 2.5e-112 1 At2g42270 68415.t04797 U5 small nuclear ribonucleoprotein... 2034 2.8e-86 1 At5g61140 68418.t07092 DEAD box RNA helicase, putative si... 326 8.3e-09 2 At5g18200 68418.t01941 expressed protein 189 0.96 1 >At1g20960 68414.t02350 U5 small nuclear ribonucleoprotein helicase, putative similar to SP|O75643 U5 small nuclear ribonucleoprotein 200 kDa helicase {Homo sapiens}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF02889: Sec63 domain Length = 7324 Minus Strand HSPs: Score = 2608 (397.4 bits), Expect = 2.5e-112, P = 2.5e-112 Identities = 526/531 (99%), Positives = 526/531 (99%), Strand = Minus / Plus Query: 669 AGTGGGGATCAGTCCCTAACCGNAAGANAAATTGAAGAGACTCAGATAATTGTTACAACA 610 |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct: 1780 AGTGGGGATCAGTCCCTAACCGGAAGAGAAATTGAAGAGACTCAGATAATTGTTACAACA 1839 Query: 609 CCAGAGAAATGGGATATCATCACTAGGAAGTCTGGAGGCCGAACTTATACTCAGCTTGTG 550 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1840 CCAGAGAAATGGGATATCATCACTAGGAAGTCTGGAGACCGAACTTATACTCAGCTTGTG 1899 Query: 549 AGACTTCTTATAATTGATGAAATTCATCTCCTTCATGACAATCGAGGGCCTGTGCTTGAA 490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1900 AGACTTCTTATAATTGATGAAATTCATCTCCTTCATGACAATCGAGGGCCTGTGCTTGAA 1959 Query: 489 AGCATTGTTGCTAGGACTCTTAGGCAAATTGAACCCACGAAAGAGAATATTCGTCTGGTT 430 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1960 AGCATTGTTGCTAGGACTCTTAGGCAAATTGAAACCACGAAAGAGAATATTCGTCTGGTT 2019 Query: 429 GGTTTATCTGCTACATTGCCAAATTATGAAGACGTGGCCTTATTTTTGCGGGTTGATCTT 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2020 GGTTTATCTGCTACATTGCCAAATTATGAAGACGTGGCCTTATTTTTGCGGGTTGATCTT 2079 Query: 369 AAGAAAGGTTTGTTTAAATTTGACCGCAGCTACAGACCCGTGCCTCTCCATCAGCAGTAT 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2080 AAGAAAGGTTTGTTTAAATTTGACCGCAGCTACAGACCCGTGCCTCTCCATCAGCAGTAT 2139 Query: 309 ATTGGAATCAGGTGTGAAGAAACCGTTGCAGAGGTTCCAGTTGATGAATGATCTTTGTTA 250 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2140 ATTGGAATCAG-TGTGAAGAAACCGTTGCAGAGGTTCCAGTTGATGAATGATCTTTGTTA 2198 Query: 249 TCAGAAAGTATTGGCTGGTGCTGGAAAGCACCAGGTCCTTATTTTTGTTCATTCAAGGAA 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2199 TCAGAAAGTATTGGCTGGTGCTGGAAAGCACCAGGTCCTTATTTTTGTTCATTCAAGGAA 2258 Query: 189 GGAAACATCAAAAACTGCTAGAGCAATAAGGGACACTGCAATGGCGAACGA 139 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2259 GGAAACATCAAAAACTGCTAGAGCAATAAGGGACACTGCAATGGCGAACGA 2309 Score = 238 (41.8 bits), Expect = 0.017, P = 0.017 Identities = 168/288 (58%), Positives = 168/288 (58%), Strand = Minus / Plus Query: 669 AGTGGGGAT-CAGTCCCTA-ACCGNAAGANAAATTGA-AGAGACTCAGATAATTGTTACA 613 | |||||| ||| | | | | ||| |||| | || | |||||||| | | Sbjct: 5108 ACTGGGGAGACAG-CATTGGATCTTAAGCTGC-TTGAGAAAGGC-CAGATAATCATAAGT 5164 Query: 612 ACACCAGAGAAATGGGATA-TCATCACTAGGAAGTCTGGAGGCCGAACTTATACTCAGCT 554 || || |||||||||||| || | | | | || | ||| ||| ||| | Sbjct: 5165 ACTCCTGAGAAATGGGATGCTCTTTCCC-GCAGGTGGAAACAGAGAAAATATGTTCAACA 5223 Query: 553 TGTGAGACTTCTTATAATTGATGAAATTCATCTCCTTC-ATGACAATCGAGGGCCTGTGC 495 || || ||| | || | || ||| | ||||| || | | ||| | || || ||| Sbjct: 5224 AGTTAGTCTTTTCATCGTCGACGAACTCCATCTAATTGGAGGTCAA-CATGGTCCAGTG- 5281 Query: 494 TTGAAAGCATT-GTTGCTAGGACTCTTAGGCAAATTG-AACCCACGAAAG-AG-AATATT 439 ||| | | | | ||| | || | | || | ||| || || | | | || || Sbjct: 5282 TTGGAGGTAATCGTTTCCAGAA-TG--AGATATATTTCAAGTCAGGTCATTAATAAGATC 5338 Query: 438 CGTCTGGTTGGTTTATCTGCTACA-TTGCCAAATTATGAAGA-CGTGG 393 | | |||| |||| || | |||| |||| |||| | ||| Sbjct: 5339 AGGATTGTTGCGCTATCCACTTCGCTTGC-AAATGCAAAAGATCTTGG 5385 >At2g42270 68415.t04797 U5 small nuclear ribonucleoprotein helicase, putative Length = 7004 Minus Strand HSPs: Score = 2034 (311.2 bits), Expect = 2.8e-86, P = 2.8e-86 Identities = 530/664 (79%), Positives = 530/664 (79%), Strand = Minus / Plus
Border_2 (84939_LB2U)
AATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATACACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTG
TTATTAAGTTGTCTAAGCGTCAATTTGTTTACASCACATTCTTGAAGGAAGATAGTGTAACTCGTGACGTTCTCCATAGTCATGAAGACATTGTTAAGAA
TAGTGACCTAAAMGATATTCTGCCTTACGGTTTTGCAATTCATCATGCSTGGGTTATCAAGGGGTGATCGTGAGATTGYTGAGACTCTTTTTTCTCAGGG
GCATGTGCAAGTCTTGGTTTCCACAGCAACTCTCGCATGGGGGGTGAATCTGCCTGCACATACCGTAATTATAAAAGGAACCCAGGNGTATAATCCTGAA
AAAGGGGCCGTGGATGGAGCTGASTCCTCTAGATGTTATGCACATGCTTGGYCGTGCTGGAAGACCTCACTATGATCAACATGNGGGAGGGCTATRATTA
TAACTGGCTACAGCGAGCTGCAATATTATCTTTCTTTGATGAATGAGCAACTACCTATTGAAAGCCASTTTATTTCCAAACTTGCTGANCAGCTTAATGC
TGAAATTGNGCTTGNAACCGNTCAGATTGCTANAGAGGCCNTGNCATTGGNTTGGGTACNCGTCTNTG
| Start of BLAST Alignment: | NT 2315 /Exon 1 of 3 |
| First 15 bp Perfect Match: | NT 2321 /Exon 1 of 3 |
BLAST Details: Query Sequence: 84939_LB2U Length: (668 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g20960 68414.t02350 U5 small nuclear ribonucleoprotein... 2442 8.7e-105 1 At2g42270 68415.t04797 U5 small nuclear ribonucleoprotein... 1784 6.1e-75 1 At5g61140 68418.t07092 DEAD box RNA helicase, putative si... 202 0.60 1 >At1g20960 68414.t02350 U5 small nuclear ribonucleoprotein helicase, putative similar to SP|O75643 U5 small nuclear ribonucleoprotein 200 kDa helicase {Homo sapiens}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF02889: Sec63 domain Length = 7324 Plus Strand HSPs: Score = 2442 (372.4 bits), Expect = 8.7e-105, P = 8.7e-105 Identities = 507/537 (94%), Positives = 514/537 (95%), Strand = Plus / Plus Query: 132 CASCACATTCTTGAAGGAAGATAGTGTAACTCGTGACGTTCTCCATAGTCATGAAGACAT 191 ||+|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2316 CAGCAGATTCTTGAAGGAAGATAGTGTAACTCGTGACGTTCTCCATAGTCATGAAGACAT 2375 Query: 192 TGTTAAGAATAGTGACCTAAAMGATATTCTGCCTTACGGTTTTGCAATTCATCATGCSTG 251 |||||||||||||||||||||+||||||||||||||||||||||||||||||||||| || Sbjct: 2376 TGTTAAGAATAGTGACCTAAAAGATATTCTGCCTTACGGTTTTGCAATTCATCATGC-TG 2434 Query: 252 GGTTATCAAGGGGTGATCGTGAGATTGYTGAGACTCTTTTTTCTCAGGGGCATGTGCAAG 311 |||||||||||||||||||||||||||+|||||||||||||||||||||||||||||||| Sbjct: 2435 GGTTATCAAGGGGTGATCGTGAGATTGTTGAGACTCTTTTTTCTCAGGGGCATGTGCAAG 2494 Query: 312 TCTTGGTTTCCACAGCAACTCTCGCATGGGGGGTGAATCTGCCTGCACATACCGTAATTA 371 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 2495 TCTTGGTTTCCACAGCAACTCTCGCATGGGGTGTGAATCTGCCTGCACATACCGTAATTA 2554 Query: 372 TAAAAGGAACCCAGGNGTATAATCCTGAAAAAGGGGCCGTGGATGGAGCTGASTCCTCTA 431 ||||||||||||||| ||||||||||||||||||||| ||||||||||||||+||||||| Sbjct: 2555 TAAAAGGAACCCAGGTGTATAATCCTGAAAAAGGGGC-GTGGATGGAGCTGAGTCCTCTA 2613 Query: 432 GATGTTATGCACATGCTTGGYCGTGCTGGAAGACCTCACTATGATCAACATGNGGGAGGG 491 ||||||||||| ||||||||+||||||||||||||||| ||||||||||||| ||||||| Sbjct: 2614 GATGTTATGCAGATGCTTGGTCGTGCTGGAAGACCTCAGTATGATCAACATG-GGGAGGG 2672 Query: 492 CTATRATTATAACTGGCTACAGCGAGCTGCAATATTATCTTTCTTTGATGAATGAGCAAC 551 |||+||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2673 -TATAATTATAACTGGCTACAGCGAGCTGCAATATTATCTTTCTTTGATGAATGAGCAAC 2731 Query: 552 TACCTATTGAAAGCCASTTTATTTCCAAACTTGCTGANCAGCTTAATGCTGAAATTGNGC 611 ||||||||||||||||+|||||||||||||||||||| ||||||||||||||||||| || Sbjct: 2732 TACCTATTGAAAGCCAGTTTATTTCCAAACTTGCTGATCAGCTTAATGCTGAAATTGTGC 2791 Query: 612 TTGNAACCGNTCAGATTGCTANAGAGGCCNTGNCATTGGNTTGGGTACNCGTCTNTG 668 ||| ||||| ||||| ||||| |||||| || |||||| |||| ||| ||| | || Sbjct: 2792 TTGGAACCGTTCAGAATGCTAGAGAGGC-TTGCCATTGGCTTGGTTACACGTATTTG 2847 >At2g42270 68415.t04797 U5 small nuclear ribonucleoprotein helicase, putative Length = 7004 Plus Strand HSPs: Score = 1784 (273.7 bits), Expect = 6.1e-75, P = 6.1e-75 Identities = 437/538 (81%), Positives = 444/538 (82%), Strand = Plus / Plus