OSU  Syngenta  VBI
PDF  Help   

At1g20960 SYNGENTA 84939

Genomic Sequence (from TAIR)
aagcatgagaccattgtcttattacgttgggcttaggaagtatgtacaggcccagcccaatccatgtacagagtcggtttcgttattggatccatagttt
caaaacggcatcgttaaagttttccaccttaaggcggtatcgctagcttatagaaagaattcgcagtcgaataaacgaaggagtgtctcctttagtcatt
taggtcgattattaggagatagaggacgtgagaagggagagatctgagtctcctactagggtttcttctactggattgattcgttgcagagagtgaagct
aagaagagattttcgtagctgtttctgtaagttttttttaatctccgtttcctcgatttgggtgtggttttattagggtttatcatctctgggagcttct
tcgtttcacttttggttcgtttcttcgatttgaggttaacattgtgtatttttttttgttcctgtttgatttggtttctaggttttcggattggtagATG
GCGAACTTGGGAGGCGGTGCGGAAGCACATGCCAGGTTCAAGCAGTATGAGTACAGAGCCAATTCTAGTCTGGTGTTAACTACTGATAATAGACCTCGGG
ATACTCATGAGCCTACAGGAGAACCGGAAACTCTGTGGGGGAAAATCGATCCGAGGTCTTTTGGTGACCGTGTTGCTAAGGGAAGGCCTCAGGAGTTGGA
GGATAAGCTGAAAAAGTCTAAGAAGAAGGAACGTGATGTTGTAGATGATATGGTAAATATTAGGCAGAGTAAGAGGCGGCGTCTAAGGGAAGAGAGTGTG
CTGACTGATACTGATGATGCGGTTTATCAGCCGAAGACTAAGGAGACGAGGGCTGCTTATGAAGCCATGCTTGGTCTTATCCAGAAGCAGTTGGGTGGGC
AACCTCCGAGTATTGTTAGTGGTGCAGCGGATGAGATTTTGGCTGTTCTCAAGAATGACGCATTTAGAAACCCTGAGAAAAAGATGGAGATTGAGAAGTT
GCTGAACAAGATTGAAAACCATGAGTTTGATCAGCTTGTTTCCATTGGAAAGTTAATCACGGACTTCCAAGAGGGTGGTGATTCTGGTGGTGGTAGAGCT
AATGATGATGAAGGGCTTGATGATGATTTGGGCGTGGCTGTTGAATTTGAGGAGAATGAAGAAGATGATGAGGAAAGCGATCCTGATATGGTTGAAGAGG
ATGATGATGAGGAGGATGATGAGCCTACCAGAACTGGAGGCATGCAGGTTGATGCAGGGATAAATGATGAGGATGCAGGAGATGCCAATGAGGGCACAAA
TCTTAATGTTCAAGACATTGATGCATATTGGCTCCAGAGAAAGATCTCTCAAGCGTATGAACAGCAGATTGATCCACAACAATGCCAGGTACTCGCAGAA
GAGCTACTAAAGATACTCGCTGAAGGGGATGATAGGGTTGTTGAGGACAAGCTGCTTATGCACCTTCAGTACGAAAAATTTAGCCTTGTCAAGTTTCTGC
TGCGTAACCGTCTTAAAGTTGTGTGGTGCACTCGTTTGGCTAGGGCAGAAGACCAGGAAGAGAGGAATAGAATCGAGGAGGAGATGAGGGGGTTAGGCCC
AGAGTTGACAGCAATTGTGGAGCAGTTGCATGCAACAAGAGCAACAGCGAAAGAGAGGGAGGAGAACCTGCAAAAAAGTATTAACGAGGAAGCCCGGCGT
TTGAAGGACGAAACTGGTGGAGATGGAGGCAGAGGCAGGAGAGATGTTGCTGATAGAGATTCAGAGAGTGGGTGGGTGAAGGGTCAGCGTCAGATGCTGG
ACCTGGAGAGCTTGGCTTTTGACCAAGGTGGTCTTCTGATGGCGAATAAGAAGTGTGACCTCCCCCCTGGCTCTTACAGAAGTCATGGCAAGGGATATGA
TGAAGTTCATGTGCCTTGGGTTTCTAAAAAGGTTGATAGGAATGAGAAGCTAGTGAAGATTACGGAAATGCCTGATTGGGCGCAACCGGCTTTTAAGGGA
ATGCAACAGTTGAACAGGGTTCAGAGCAAAGTGTATGACACTGCGCTTTTCAAGGCAGAGAATATTCTTCTTTGTGCTCCAACTGGTGCTGGGAAAACCA
ATGTTGCTATGCTCACCATACTGCAGCAACTTGAAATGAATAGGAACACAGATGGAACTTATAACCATGGAGATTACAAAATTGTCTATGTTGCACCCAT
GAAAGCCCTTGTTGCTGAAGTTGTAGGTAATTTGTCTAATCGTCTGAAGGATTATGGAGTTATTGTGAGAGAACTCAGTGGGGATCAGTCCCTAACCGGA
AGAGAAATTGAAGAGACTCAGATAATTGTTACAACACCAGAGAAATGGGATATCATCACTAGGAAGTCTGGAGACCGAACTTATACTCAGCTTGTGAGAC
TTCTTATAATTGATGAAATTCATCTCCTTCATGACAATCGAGGGCCTGTGCTTGAAAGCATTGTTGCTAGGACTCTTAGGCAAATTGAAACCACGAAAGA
GAATATTCGTCTGGTTGGTTTATCTGCTACATTGCCAAATTATGAAGACGTGGCCTTATTTTTGCGGGTTGATCTTAAGAAAGGTTTGTTTAAATTTGAC
CGCAGCTACAGACCCGTGCCTCTCCATCAGCAGTATATTGGAATCAGTGTGAAGAAACCGTTGCAGAGGTTCCAGTTGATGAATGATCTTTGTTATCAGA
AAGTATTGGCTGGTGCTGGAAAGCACCAGGTCCTTATTTTTGTTCATTCAAGGAAGGAAACATCAAAAACTGCTAGAGCAATAAGGGACACTGCAATGGC
GAACGATACCCTCAGCAGATTCTTGAAGGAAGATAGTGTAACTCGTGACGTTCTCCATAGTCATGAAGACATTGTTAAGAATAGTGACCTAAAAGAT
ATTCTGCCTTACGGTTTTGCAATTCATCATGCTGGGTTATCAAGGGGTGATCGTGAGATTGTTGAGACTCTTTTTTCTCAGGGGCATGTGCAAGTCTTGG
TTTCCACAGCAACTCTCGCATGGGGTGTGAATCTGCCTGCACATACCGTAATTATAAAAGGAACCCAGGTGTATAATCCTGAAAAAGGGGCGTGGATGGA
GCTGAGTCCTCTAGATGTTATGCAGATGCTTGGTCGTGCTGGAAGACCTCAGTATGATCAACATGGGGAGGGTATAATTATAACTGGCTACAGCGAGCTG
CAATATTATCTTTCTTTGATGAATGAGCAACTACCTATTGAAAGCCAGTTTATTTCCAAACTTGCTGATCAGCTTAATGCTGAAATTGTGCTTGGAACCG
TTCAGAATGCTAGAGAGGCTTGCCATTGGCTTGGTTACACGTATTTGTATATCCGTATGGTTCGTAATCCAACGTTGTATGGCTTAGCGCCTGATGCCCT
TGCAAAAGACGTAGTTTTGGAGGAGAGAAGAGCTGACCTGgtacggaatttgttcatctgcataaattttggcttttgctatctactgtcacattatttt
tctatagttaaatgcccataaatactatgcctagtatctgaagctttcatacagcctactattatgcagcctgtgattaattgtgcgtattttttatcac
tgctctgaaagttacttttatttgtgttaatattcttagtgaagagtttgtaacgctctttcatatagtatcattgcccctaaatattatgcctagcatc
agtagctttgcctccgtgattaactgttgggatcacttgtgcatcatcatgtactgttgggatcacttgtgcatcatcatgttgattactaatctagtaa
cagaaatttctttttgagtattttgaatggggagtatgtacctgattatttaattttatttctctgaaaatgacgtttatttatttgatatcatttccca
taaataatgttcctagtgtcagtagctttctcactgtctattacatgcaatcaatgatgaactgtttggtgtttgccttgtcttcttcaagttgatgaca
gattagtatttcatatatctttttgagatttccgaacaatgagtttgcattcggttatgtaatatcattgttctaaagtttcatatatcattgatccttt
aatggcgagctgtgtctaatatttgcttgaatccttgtttttgcagATACATTCGGCTGCTACTATCTTGGACAAAAACAACTTGGTTAAGTATGACAGG
AAAAGTGGATACTTCCAAGTTACAGATTTGGGACGCATAGCAAGCTACTATTACATAACCCATGGGACCATAGCTACATACAATGAGCATTTGAAGCCAA
CAATGGGTGATATAGATCTTTATCGTCTGTTCTCCCTGAGTGACGAGTTCAAGTATGTGACTGTTCGGCAAGATGAGAAGATGGAACTGGCGAAACTTTT
GGATCGTGTCCCAATTCCGATCAAGGAAACTTTGGAGGAGCCCAGTGCCAAAATAAATGTATTGCTGCAGGCATATATTTCACAGCTAAAGCTTGAGGGT
CTTTCTTTGACATCTGACATGGTTTACATTACGCAGgtttgttctacactttcttctctcgtcccttctagttacattgataaattagctgtatctattt
tctgatacttatatttcgttcctttctatcatttttagAGTGCTGGACGTCTTGTGCGAGCTCTTTATGAAATTGTATTGAAGCGGGGATGGGCTCAATT
GGCAGAGAAGGCTCTGAACTTGTCTAAAATGGTAGGGAAGAGGATGTGGAGTGTTCAGACACCCCTGCGTCAGTTTCATGGACTCTCCAATGATATTTTG
ATGCAGTTGGAGAAGAAGGATTTGGTGTGGGAGAGGTACTATGATCTATCCGCACAGGAGCTAGGAGAGCTTATTCGCAGTCCTAAGATGGGCAAGCCGC
TTCACAAGTTCATTCACCAGTTCCCAAAAGTGACTCTTTCTGCACATGTTCAGCCTATTACTCGCACTGTTCTGAATGTGGAGCTTACAGTTACACCTGA
TTTCCTGTGGGACGAGAAAATTCATAAATATGTTGAGCCGTTTTGGATAATTGTGGAAGACAATGATGGTGAAAAGATCCTTCATCACGAGTATTTTCTT
TTGAAGAAGCAGTATATTGATGAGGATCACACTTTGCACTTCACTGTGCCAATTTTTGAACCGTTGCCACCTCAGTATTTTGTTCGAGTGGTTTCAGACA
AGTGGCTTGGCTCGGAGACTGTGTTGCCTGTATCTTTCAGGCATCTTATTCTTCCAGAGAAGTATCCACCTCCGACAGAGTTACTGGACTTGCAACCTCT
CCCAGTGACGGCGCTAAGGAATCCGAATTATGAGATACTCTATCAGGATTTCAAGCATTTCAATCCAGTGCAGACTCAGGTCTTTACTGTTTTGTATAAC
ACTAACGACAATGTGTTGGTTGCTGCTCCAACGGGAAGTGGGAAAACTATTTGTGCGGAGTTCGCTATTTTGAGGAATCATCATGAAGGACCTGATGCTA
CAATGCGTGTTGTTTATATTGCACCACTTGAGGCTATTGCCAAGGAGCAGTTTCGTATCTGGGAGGGGAAGTTTGGGAAGGGTCTTGGTTTACGGGTTGT
TGAGCTAACTGGGGAGACAGCATTGGATCTTAAGCTGCTTGAGAAAGGCCAGATAATCATAAGTACTCCTGAGAAATGGGATGCTCTTTCCCGCAGGTGG
AAACAGAGAAAATATGTTCAACAAGTTAGTCTTTTCATCGTCGACGAACTCCATCTAATTGGAGGTCAACATGGTCCAGTGTTGGAGGTAATCGTTTCCA
GAATGAGATATATTTCAAGTCAGGTCATTAATAAGATCAGGATTGTTGCGCTATCCACTTCGCTTGCAAATGCAAAAGATCTTGGGGAGTGGATTGGGGC
CAGTTCCCACGGCCTTTTCAACTTCCCTCCCGGAGTCCGTCCTGTTCCACTGGAGATCCACATTCAGGGAGTGGATATATCCAGTTTTGAAGCCAGGATG
CAGGCGATGACCAAACCAACCTACACCGCCATAGTTCAGCACGCCAAGAACAAGAAGCCGGCTATTGTTTTCGTCCCAACCCGTAAACATGTCCGCTTGA
CTGCTGTGGATCTGATGGCTTATTCTCACATGGATAACCCGCAGAGTCCTGATTTCTTGTTAGGGAAGCTGGAAGAACTGGACCCTTTTGTTGAACAAAT
CCGCGAGGAAACACTGAAGGAGACACTGTGTCATGGTATTGGATACTTGCATGAGGGTTTAAGCAGTCTGGATCAGGAGATTGTGACACAGCTCTTTGAA
GCTGGACGGATTCAGGTTTGTGTGATGAGCAGTTCATTGTGTTGGGGCACTCCATTAACTGCGCATTTGGTGGTCGTAATGGGAACGCAGTATTACGATG
GGAGGGAAAATTCACATTCTGATTATCCAGTCCCTGATCTGCTTCAGATGATGGGGCGTGCTAGCCGACCACTTCTTGACAATGCCGGGAAGTGTGTGAT
CTTTTGTCATGCACCGCGGAAGGAGTATTACAAGAAGTTTTTGTACGAAGCCTTCCCTGTGGAAAGTCAGCTCCAGCATTTCTTGCATGATAATTTCAAC
GCAGAAGTGGTTGCTGGGGTTATAGAGAACAAGCAAGATGCCGTGGATTATCTTACATGGACTTTCATGTACAGGAGGCTTCCCCAGAACCCTAACTACT
ACAATCTCCAAGGTGTTAGCCACAGGCATTTGTCTGATCACCTATCAGAGCTGGTTGAGAACACCTTGTCTGATCTTGAAGCCAGTAAATGCATTGAGGT
AGAGGATGAGATGGAACTCTCTCCTCTCAACCTTGGTATGATTGCATCCTATTATTACATCAGTTATACCACCATTGAGCGCTTCAGTTCACTGTTGTCT
TCTAAAACCAAGATGAAGGGACTTCTTGAAATCTTAACATCGGCTTCAGAGTATGACATGATTCCTATACGGCCTGGCGAAGAGGACACCGTTCGAAGAT
TAATCAATCACCAGAGGTTCTCTTTTGAAAACCCAAAATGCACAGACCCTCATGTGAAGGCAAACGCGCTTCTTCAGGCGCATTTCTCAAGGCAAAACAT
TGGCGGGAACTTGGCAATGGATCAGCGTGATGTCCTTCTATCTGCAACCAGACTTCTTCAAGCGATGGTCGATGTGATATCAAGCAATGGCTGGCTGAAT
CTTGCTCTGCTAGCTATGGAAGTAAGCCAGATGGTGACTCAAGGCATGTGGGAGCGGGACTCCATGCTTCTGCAGCTCCCTCACTTCACAAAAGACTTGG
CCAAGAGGTGCCAGGAGAATCCAGGGAAAAACATTGAAACCGTATTCGATCTTGTGGAGATGGAGGATGAAGAACGCCAAGAGCTTCTCAAGATGTCAGA
CGCTCAGCTTCTAGACATTGCCAGATTCTGCAACCGCTTCCCAAACATCGACCTTACTTACGAGATTGTGGGCAGTGAAGAGGTGAACCCAGGGAAAGAG
GTTACATTGCAAGTGATGCTTGAGAGAGACATGGAGGGGAGGACAGAAGTGGGACCTGTGGATTCACTGAGGTATCCCAAGACCAAAGAAGAAGGATGGT
GGCTGGTCGTGGGCGACACCAAGACAAACCAGTTGCTGGCAATCAAGCGTGTCTCATTGCAACGGAAAGTGAAGGTGAAGCTGGATTTCACAGCACCGAG
TGAACCAGGAGAGAAGTCATACACACTATACTTCATGTGTGACTCTTACTTGGGGTGTGACCAAGAGTACTCGTTCTCTGTTGATGTCAAAGGATCCGGC
GCTGGAGATCGCATGGAAGAATGAtttgttattcaggttagttccacagttttctggtcatagttttcggatttagattctgtacatggttgtagttttt
gtgttacgaacttggctttactagattctgctatgtgcattgaccaactcgctttcatctattgtttgagtaatttgttcatcaatctgctatttttctg
tttcgtctgttttctttttgcatgagctatgtattaggttttactcttgagcattgatttacttatctaggtattagaatacaggtatgctcatggtata
tatatacctagtattgtgaaatgattgattgataagttagtgaacaatgttgatcagcaaattgttagaaatctgtataattggatggtgatttgatgtg
tgctttggatggtgatttgatatgtgtgcatcactgctatatgaaaactgctttcttgaatcatgtctcataaaaatctcacatgatgttcctttaaaat
agc

Border_1 (84939_LB1D)

AATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATACACCAAATCAATTAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTT
ATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATTCGTTCGCCATTGCAGTGTCCCTTATTGCTCTAGCAGTTTTTGATGTTTCCTTCCTTGAATG
AACAAAAATAAGGACCTGGTGCTTTCCAGCACCAGCCAATACTTTCTGATAACAAAGATCATTCATCAACTGGAACCTCTGCAACGGTTTCTTCACACCT
GATTCCAATATACTGCTGATGGAGAGGCACGGGTCTGTAGCTGCGGTCAAATTTAAACAAACCTTTCTTAAGATCAACCCGCAAAAATAAGGCCACGTCT
TCATAATTTGGCAATGTAGCAGATAAACCAACCAGACGAATATTCTCTTTCGTGGGTTCAATTTGCCTAAGAGTCCTAGCAACAATGCTTTCAAGCACAG
GCCCTCGATTGTCATGAAGGAGATGAATTTCATCAATTATAAGAAGTCTCACAAGCTGAGTATAAGTTCGGCCTCCAGACTTCCTAGTGATGATATCCCA
TTTCTCTGGTGTTGTAACAATTATCTGAGTCTCTTCAATTTNTCTTNCGGTTAGGGACTGATCCCCACT

Start of BLAST Alignment:NT 2309 /Exon 1 of 3
First 15 bp Perfect Match:NT 2309 /Exon 1 of 3
BLAST Details:
Query Sequence: 84939_LB1D 
Length: (669 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At1g20960 68414.t02350 U5 small nuclear ribonucleoprotein...  2608  2.5e-112  1
At2g42270 68415.t04797 U5 small nuclear ribonucleoprotein...  2034  2.8e-86   1
At5g61140 68418.t07092 DEAD box RNA helicase, putative si...   326  8.3e-09   2
At5g18200 68418.t01941 expressed protein                       189  0.96      1


>At1g20960 68414.t02350 U5 small nuclear ribonucleoprotein helicase, putative
           similar to SP|O75643 U5 small nuclear ribonucleoprotein 200 kDa
           helicase {Homo sapiens}; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal domain,
           PF02889: Sec63 domain
        Length = 7324

  Minus Strand HSPs:

 Score = 2608 (397.4 bits), Expect = 2.5e-112, P = 2.5e-112
 Identities = 526/531 (99%), Positives = 526/531 (99%), Strand = Minus / Plus

Query:   669 AGTGGGGATCAGTCCCTAACCGNAAGANAAATTGAAGAGACTCAGATAATTGTTACAACA 610
             |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct:  1780 AGTGGGGATCAGTCCCTAACCGGAAGAGAAATTGAAGAGACTCAGATAATTGTTACAACA 1839

Query:   609 CCAGAGAAATGGGATATCATCACTAGGAAGTCTGGAGGCCGAACTTATACTCAGCTTGTG 550
             ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct:  1840 CCAGAGAAATGGGATATCATCACTAGGAAGTCTGGAGACCGAACTTATACTCAGCTTGTG 1899

Query:   549 AGACTTCTTATAATTGATGAAATTCATCTCCTTCATGACAATCGAGGGCCTGTGCTTGAA 490
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1900 AGACTTCTTATAATTGATGAAATTCATCTCCTTCATGACAATCGAGGGCCTGTGCTTGAA 1959

Query:   489 AGCATTGTTGCTAGGACTCTTAGGCAAATTGAACCCACGAAAGAGAATATTCGTCTGGTT 430
             ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct:  1960 AGCATTGTTGCTAGGACTCTTAGGCAAATTGAAACCACGAAAGAGAATATTCGTCTGGTT 2019

Query:   429 GGTTTATCTGCTACATTGCCAAATTATGAAGACGTGGCCTTATTTTTGCGGGTTGATCTT 370
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2020 GGTTTATCTGCTACATTGCCAAATTATGAAGACGTGGCCTTATTTTTGCGGGTTGATCTT 2079

Query:   369 AAGAAAGGTTTGTTTAAATTTGACCGCAGCTACAGACCCGTGCCTCTCCATCAGCAGTAT 310
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2080 AAGAAAGGTTTGTTTAAATTTGACCGCAGCTACAGACCCGTGCCTCTCCATCAGCAGTAT 2139

Query:   309 ATTGGAATCAGGTGTGAAGAAACCGTTGCAGAGGTTCCAGTTGATGAATGATCTTTGTTA 250
             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2140 ATTGGAATCAG-TGTGAAGAAACCGTTGCAGAGGTTCCAGTTGATGAATGATCTTTGTTA 2198

Query:   249 TCAGAAAGTATTGGCTGGTGCTGGAAAGCACCAGGTCCTTATTTTTGTTCATTCAAGGAA 190
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2199 TCAGAAAGTATTGGCTGGTGCTGGAAAGCACCAGGTCCTTATTTTTGTTCATTCAAGGAA 2258

Query:   189 GGAAACATCAAAAACTGCTAGAGCAATAAGGGACACTGCAATGGCGAACGA 139
             |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2259 GGAAACATCAAAAACTGCTAGAGCAATAAGGGACACTGCAATGGCGAACGA 2309

 Score = 238 (41.8 bits), Expect = 0.017, P = 0.017
 Identities = 168/288 (58%), Positives = 168/288 (58%), Strand = Minus / Plus

Query:   669 AGTGGGGAT-CAGTCCCTA-ACCGNAAGANAAATTGA-AGAGACTCAGATAATTGTTACA 613
             | ||||||  ||| |  |  | |  |||     |||| | || | ||||||||  | |  
Sbjct:  5108 ACTGGGGAGACAG-CATTGGATCTTAAGCTGC-TTGAGAAAGGC-CAGATAATCATAAGT 5164

Query:   612 ACACCAGAGAAATGGGATA-TCATCACTAGGAAGTCTGGAGGCCGAACTTATACTCAGCT 554
             || || ||||||||||||  || |  |  | | ||    |    |||  |||  ||| | 
Sbjct:  5165 ACTCCTGAGAAATGGGATGCTCTTTCCC-GCAGGTGGAAACAGAGAAAATATGTTCAACA 5223

Query:   553 TGTGAGACTTCTTATAATTGATGAAATTCATCTCCTTC-ATGACAATCGAGGGCCTGTGC 495
              || || ||| | ||  | || ||| | |||||  ||  | | ||| |  || || ||| 
Sbjct:  5224 AGTTAGTCTTTTCATCGTCGACGAACTCCATCTAATTGGAGGTCAA-CATGGTCCAGTG- 5281

Query:   494 TTGAAAGCATT-GTTGCTAGGACTCTTAGGCAAATTG-AACCCACGAAAG-AG-AATATT 439
             ||| | | | | ||| | || | |   ||  | |||  ||  || |  |  |  || || 
Sbjct:  5282 TTGGAGGTAATCGTTTCCAGAA-TG--AGATATATTTCAAGTCAGGTCATTAATAAGATC 5338

Query:   438 CGTCTGGTTGGTTTATCTGCTACA-TTGCCAAATTATGAAGA-CGTGG 393
              |  | ||||   ||||  || |  |||| ||||    |||| | |||
Sbjct:  5339 AGGATTGTTGCGCTATCCACTTCGCTTGC-AAATGCAAAAGATCTTGG 5385


>At2g42270 68415.t04797 U5 small nuclear ribonucleoprotein helicase, putative
        Length = 7004

  Minus Strand HSPs:

 Score = 2034 (311.2 bits), Expect = 2.8e-86, P = 2.8e-86
 Identities = 530/664 (79%), Positives = 530/664 (79%), Strand = Minus / Plus


Border_2 (84939_LB2U)

AATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATACACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTG
TTATTAAGTTGTCTAAGCGTCAATTTGTTTACASCACATTCTTGAAGGAAGATAGTGTAACTCGTGACGTTCTCCATAGTCATGAAGACATTGTTAAGAA
TAGTGACCTAAAMGATATTCTGCCTTACGGTTTTGCAATTCATCATGCSTGGGTTATCAAGGGGTGATCGTGAGATTGYTGAGACTCTTTTTTCTCAGGG
GCATGTGCAAGTCTTGGTTTCCACAGCAACTCTCGCATGGGGGGTGAATCTGCCTGCACATACCGTAATTATAAAAGGAACCCAGGNGTATAATCCTGAA
AAAGGGGCCGTGGATGGAGCTGASTCCTCTAGATGTTATGCACATGCTTGGYCGTGCTGGAAGACCTCACTATGATCAACATGNGGGAGGGCTATRATTA
TAACTGGCTACAGCGAGCTGCAATATTATCTTTCTTTGATGAATGAGCAACTACCTATTGAAAGCCASTTTATTTCCAAACTTGCTGANCAGCTTAATGC
TGAAATTGNGCTTGNAACCGNTCAGATTGCTANAGAGGCCNTGNCATTGGNTTGGGTACNCGTCTNTG

Start of BLAST Alignment:NT 2315 /Exon 1 of 3
First 15 bp Perfect Match:NT 2321 /Exon 1 of 3
BLAST Details:
Query Sequence: 84939_LB2U 
Length: (668 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At1g20960 68414.t02350 U5 small nuclear ribonucleoprotein...  2442  8.7e-105  1
At2g42270 68415.t04797 U5 small nuclear ribonucleoprotein...  1784  6.1e-75   1
At5g61140 68418.t07092 DEAD box RNA helicase, putative si...   202  0.60      1


>At1g20960 68414.t02350 U5 small nuclear ribonucleoprotein helicase, putative
           similar to SP|O75643 U5 small nuclear ribonucleoprotein 200 kDa
           helicase {Homo sapiens}; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal domain,
           PF02889: Sec63 domain
        Length = 7324

  Plus Strand HSPs:

 Score = 2442 (372.4 bits), Expect = 8.7e-105, P = 8.7e-105
 Identities = 507/537 (94%), Positives = 514/537 (95%), Strand = Plus / Plus

Query:   132 CASCACATTCTTGAAGGAAGATAGTGTAACTCGTGACGTTCTCCATAGTCATGAAGACAT 191
             ||+|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2316 CAGCAGATTCTTGAAGGAAGATAGTGTAACTCGTGACGTTCTCCATAGTCATGAAGACAT 2375

Query:   192 TGTTAAGAATAGTGACCTAAAMGATATTCTGCCTTACGGTTTTGCAATTCATCATGCSTG 251
             |||||||||||||||||||||+||||||||||||||||||||||||||||||||||| ||
Sbjct:  2376 TGTTAAGAATAGTGACCTAAAAGATATTCTGCCTTACGGTTTTGCAATTCATCATGC-TG 2434

Query:   252 GGTTATCAAGGGGTGATCGTGAGATTGYTGAGACTCTTTTTTCTCAGGGGCATGTGCAAG 311
             |||||||||||||||||||||||||||+||||||||||||||||||||||||||||||||
Sbjct:  2435 GGTTATCAAGGGGTGATCGTGAGATTGTTGAGACTCTTTTTTCTCAGGGGCATGTGCAAG 2494

Query:   312 TCTTGGTTTCCACAGCAACTCTCGCATGGGGGGTGAATCTGCCTGCACATACCGTAATTA 371
             ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct:  2495 TCTTGGTTTCCACAGCAACTCTCGCATGGGGTGTGAATCTGCCTGCACATACCGTAATTA 2554

Query:   372 TAAAAGGAACCCAGGNGTATAATCCTGAAAAAGGGGCCGTGGATGGAGCTGASTCCTCTA 431
             ||||||||||||||| ||||||||||||||||||||| ||||||||||||||+|||||||
Sbjct:  2555 TAAAAGGAACCCAGGTGTATAATCCTGAAAAAGGGGC-GTGGATGGAGCTGAGTCCTCTA 2613

Query:   432 GATGTTATGCACATGCTTGGYCGTGCTGGAAGACCTCACTATGATCAACATGNGGGAGGG 491
             ||||||||||| ||||||||+||||||||||||||||| ||||||||||||| |||||||
Sbjct:  2614 GATGTTATGCAGATGCTTGGTCGTGCTGGAAGACCTCAGTATGATCAACATG-GGGAGGG 2672

Query:   492 CTATRATTATAACTGGCTACAGCGAGCTGCAATATTATCTTTCTTTGATGAATGAGCAAC 551
              |||+|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2673 -TATAATTATAACTGGCTACAGCGAGCTGCAATATTATCTTTCTTTGATGAATGAGCAAC 2731

Query:   552 TACCTATTGAAAGCCASTTTATTTCCAAACTTGCTGANCAGCTTAATGCTGAAATTGNGC 611
             ||||||||||||||||+|||||||||||||||||||| ||||||||||||||||||| ||
Sbjct:  2732 TACCTATTGAAAGCCAGTTTATTTCCAAACTTGCTGATCAGCTTAATGCTGAAATTGTGC 2791

Query:   612 TTGNAACCGNTCAGATTGCTANAGAGGCCNTGNCATTGGNTTGGGTACNCGTCTNTG 668
             ||| ||||| ||||| ||||| ||||||  || |||||| |||| ||| ||| | ||
Sbjct:  2792 TTGGAACCGTTCAGAATGCTAGAGAGGC-TTGCCATTGGCTTGGTTACACGTATTTG 2847


>At2g42270 68415.t04797 U5 small nuclear ribonucleoprotein helicase, putative
        Length = 7004

  Plus Strand HSPs:

 Score = 1784 (273.7 bits), Expect = 6.1e-75, P = 6.1e-75
 Identities = 437/538 (81%), Positives = 444/538 (82%), Strand = Plus / Plus