At1g24340 SYNGENTA 85904
Genomic Sequence (from TAIR)
ACCTGCGCCAGTTTCAGCTCCAGAGTCAGAAGTAAAACCTTTGACTAAATCAATCTCCAGAAGAAAGACAATGACAAGACCATTCAGTTTCCTCTGGAAG AAAAGCCACTCGATCCATCATTGAcactcctatgtaaagttgcgttttcttctgtcgtccttaacttcttacaagtcatccgcatagagaaaaaaaatat ttgtacaggtcacattgtgatcacaccattttttgctaacgaatcctctctcgcgagaggtatccatgtagatagtctactgatgtatcaggttatatat atgaaacctcacttttcagtacaaaaacagagtcgacaattcttgaaaactctgtttgacatctgtttattttgacggtcgattcacaggtggaccaatt ctagtggataaaactagtgccacgtagtatgaataaatactatataataatacttaaaATGACAAGATATAATAACAAAGCCCCACCATCACCTGCTGTC CTGCGCGGCGTCTCCGTCGTCTCTGTCGCCGCATCTCCGTCATCATTTTCGCTACCGCATAATCTCTGTCTCCGCCGTCACTGCCGCAGCCTAGAATATG ATTTCTCGTTTCTGAAACCCTTGTATAAGGTAGAAAGAGAGAGAAATCATCCAAAGCAAGGACCTTCCAGCGACTTTCAGGGTTTAAGGTTTAGCTTCTC GACTATGGCGATTCTAGGGCTTATCAAGAGGGTTACACGAATAACCGTAAACAATTCGAGGGTCAGAGTGTACCCAGTGAGGTACTTCCAAAGGAAGGAC CTTTCAAGCACAAATCTATTCAATGGTGAAGATGCTGCTAAGCTTCCTGTTCTGATCGTCGGCGCTGGACCGgtgggactcgttttatccatccttctca ccaaactaggtacaatttttctcataatttctctaattttcatctgaagttttgagttttgagcttacattatcaagttaagttcacgtctttgatcgaa ttgaattctcacatttatgttaggagtgaaatgtgctgttgttgacaaagccacaagcttctcgaaacatccacaagcacactttatcaacaaccgatca atggaggttggattttttgtgtttcctgccgttaatattgtttttggtggttttagatttttgaactttaatgtctcagttctcgtatacttagATCTTC CGTGAATTGGATGGATTAGCTGAGGAGATTGAAAGATCACAGCCTCCTGTAGATTTGTGGAGAAAATTTATTTACTGTACATCTCTCTCCGGCTCAACAC TAGGCACAGTTGATCACATGCAGCCTCAAGgtgtgtttcttccgtacattttctagtgttaatggttctcatagagtaatacaatttatgttgaggaaaa atgcagacctttcacagaagttcttgtggtgtttatatatagATTTTGAGAAAGTTGTCAGCCCGGCTTCTGTTGCTCACTTCTCCCAGTACAAATTGAC AAATTTATTGCTTAAGCGGTTGGAAGACCTCGGCTTTCATGTTCGTGGTTCCAAAGAGTCGGATGGTCTTGAGGCTGACTCTGTGGTTGCGAGGCAAATT CTTATGGGTCATGAGTGTGTGGGGATTGATGCTAACAAGGACAGTATTACTGCAACTGTTTCTTTTCTCAAAGGAGGCAAGCATATGAAAAGAAACATTC AATGTAGTCTACTGGTTGGTGCTGATGGTGCTGGGAGTGCAGTAAGAAAGCTCACAGTAATAGAAATGCGAGGGGAAAGAGATCTACAGAAGCTTGTTAG TGTCCATTTCATGAGTAGAGAGCTCGGTGAGTACCTGATCAGTAACAGACCAGGGATGCTATTTTTTATTTTTAACACCGATGGTATAGGAGTTCTTGTT GCCCATGATCTTCTACAAGGAGAATTTGTTTTGCAGgtagctatagccccgacccagatattcaaggatactttaatctgattttgtacttaaaagtagt gttatataccgtagcttagcatatattcatttttttttattgcagattccatactatccacctcaacagagtctatctgattttagtcctgaggtattta ctatcattacctattaaagaatggattttcacttgtgaagactcattcacctctatggttttatctctgtcccagctgtgaccaacttcaaatgcgagtt tgttttcaggtctgcctgaccgatgattgttttgtagATGTGCAAGATGCTGATATTCAATTTGGTGGGACATGAGCTTTCAGACTTGGATGTAGCTGAT ATTAAGCCATGGGTCATGCATGCTGAAGTCGCCGAGAAATTCATGTGTTGTGAGAACAGAGTGATACTTGCTGGTGATGCTGCTCACCGGTTCCCGCCTG CTGGAGGTTTTGgtacgtgttccaatatttttgaaaaggggaaccatacactgcttctttgacagttttggcatgtacgatggttataatttcggaagaa atctaatatttttatattgtcgtactaacggattgtggtactaacggatgccccagacttggaagttgatcttaaaggatccttgttctcagtttctttt tctaagttataagaatctagtggtggcaagcctcagtaattggtttgattttgatggacattcttgatccaaataaaagcagaaaaatattttgatttat taaagtttaaaacatcagcagtcttgaaaagtattttgatagcaaattacatgattttttgcagGAATGAACACTGGAATTCAGGATGCTCATAATCTTG CATGGAAAATAGCAGCTCTTGTTCAGGGTTCTGCAAACTCTTCAATTCTTAAAACTTATGAAACAGAACGTAGGCCGgtacggtattcatcttttataac tttttcttgccatcctttcctcctaacttgattcattaacacatatcttattgtgactgctagATTGCCCTTTCCAATACTTCACTCAGTGTTCAAAACT TCAGAGCAGCTATGTCAGTTCCTTCAGCGCTAGGCCTTGACCCAACAGTTGCAAACTCAGgtaaactaaaactagcttgtcttcttgctcatttcatagt tccatgatcaggtttaaagcaattatatctctatggtgttgtagtgcataggtttataaacaaaacagttggttcgatccttccaactgggctgcaaaag gcaatcttggataatgtctttgcactagGTCGTGCACAGCTTTCAGAATCTCTGTTGAATGAGAGCAATCCACTGGGAAATCAGAGACTTAGCAGACTAA AGAGTATCTTCGAAGGAGGAAAAAGCCTTCAACTACAGTTTCCTGCAGAAGATCTTGGTTTCAGgtatagtcaccatctttggaactgtagaattctaac tctgtatgagtagtaccaagaatagaaaagagatagaaagtagggtttgctgctttgtaaactgatatcaggggtttcatgacacggagagtgtggtctt
Border_1 (85904_LB)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATC:AATTCA:TTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
CGTGATGTTCATCGTTGTCGGGACGGACTAAAATAGATCCTCTCTCTGACATTTTACAAATACTCCACCACGAAGTTCCTTCACCATTTTGTTTTTTAAC
TTCCATAACATCGACATAATTTTCCCATGGAGCTAATGCTGAATTGCTCTTCCTTTCAAGACCATCATCACTACTAGGCCAGACCACGCATACTTTTACA
CTAGCCATAAACTCTTTTGCGACTTTGAATGTAGCATGAGCTAGCTCATAGGACTCTTGTAATGGCGATATTATAAGTAGAAACTCCACTTTCTCTGTCG
AAACAAGATCCAGTGTAGAAACAATAACCTCTCTTGTGGAATCTGACAGTATTTTCACATACATATGAGGCAGTCTTGAACCTGGTTCAGCACAAGGGAC
ATAGTCTCTTCTACGACCACTCGGTACTTCGGGATCACCAGCTTCAGACTCGTTATCAGGAACAATGGCTCCCTCTAAATACCTAAATAGTAAACACAGT
AGCTTCTGTTACTCAAACTTTGAATTTATATATCTTTTGGTGAAATATAATGCGAGAAACACACTGGTTTAAACATTAAAGACCACACTCTCCGTGTTAT
GAAACCCCTGATATCAGTTTACAAAGCAGCAAACCCTACTT
| Start of BLAST Alignment: | NT 3638 / Exon 8 of 8 |
| First 15 bp Perfect Match: | NT 3604 / Exon 8 of 8 |
BLAST Details: Query Sequence: 85904_LB Length: (839 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g24340 68414.t02748 monooxygenase family protein simil... 3114 1.6e-136 1 At1g24350 68414.t02749 expressed protein contains Pfam do... 1277 5.3e-57 2 At5g40690 68418.t04600 expressed protein 185 0.997 1 At5g54860 68418.t06345 integral membrane transporter fami... 184 0.9999 1 >At1g24340 68414.t02748 monooxygenase family protein similar to polyketide hydroxylases from several bacterial species; contains Pfam:PF01360 [Monooxygenase] Length = 3697 Minus Strand HSPs: Score = 3114 (473.3 bits), Expect = 1.6e-136, P = 1.6e-136 Identities = 642/660 (97%), Positives = 642/660 (97%), Strand = Minus / Plus Query: 839 AAGTAGGGTTTGCTGCTTTGTAAACTGATATCAGGGGTTTCATAACACGGAGAGTGTGGT 780 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 2980 AAGTAGGGTTTGCTGCTTTGTAAACTGATATCAGGGGTTTCATGACACGGAGAGTGTGGT 3039 Query: 779 CTTTAATGTTTAAACCAGTGTGTTTCTCGCATTATATTTCACCAAAAGATATATAAATTC 720 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 3040 CTTTAATGTTTAAACCAGTGTGTTTCTCGCATTATATTTCAACAAAAGATATATAAATTC 3099 Query: 719 AAAGTTTGAGTAACAGAAGCTACTGTGTTTACTATTTAGGTATTTAGAGGGAGCCATTGT 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3100 AAAGTTTGAGTAACAGAAGCTACTGTGTTTACTATTTAGGTATTTAGAGGGAGCCATTGT 3159 Query: 659 TCCTGATAACGAGTCTGAAGCTGGTGATCCCGAAGTACCGAGTGGTCGTAGAAGAGACTA 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3160 TCCTGATAACGAGTCTGAAGCTGGTGATCCCGAAGTACCGAGTGGTCGTAGAAGAGACTA 3219 Query: 599 TGTCCCTTGTGCTGAACCAGGTTCAAGACTGCCTCATATGTATGTGAAAATACTGTCAGA 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3220 TGTCCCTTGTGCTGAACCAGGTTCAAGACTGCCTCATATGTATGTGAAAATACTGTCAGA 3279 Query: 539 TTCCACAAGAGAGGTTATTGTTTCTACACTGGATCTTGTTTCGACAGAGAAAGTGGAGTT 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3280 TTCCACAAGAGAGGTTATTGTTTCTACACTGGATCTTGTTTCGACAGAGAAAGTGGAGTT 3339 Query: 479 TCTACTTATAATATCGCCATTACAAGAGTCCTATGAGCTAGCTCATGCTACATTCAAAGT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3340 TCTACTTATAATATCGCCATTACAAGAGTCCTATGAGCTAGCTCATGCTACATTCAAAGT 3399 Query: 419 CGCAAAAGAGTTTATGGCTAGTGTAAAAGTATGCGTGGTCTGGCCTAGTAGTGATGATGG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3400 CGCAAAAGAGTTTATGGCTAGTGTAAAAGTATGCGTGGTCTGGCCTAGTAGTGATGATGG 3459 Query: 359 TCTTGAAAGGAAGAGCAATTCAGCATTAGCTCCATGGGAAAATTATGTCGATGTTATGGA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3460 TCTTGAAAGGAAGAGCAATTCAGCATTAGCTCCATGGGAAAATTATGTCGATGTTATGGA 3519 Query: 299 AGTTAAAAAACAAAATGGTGAAGGAACTTCGTGGTGGAGTATTTGTAAAATGTCAGAGAG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3520 AGTTAAAAAACAAAATGGTGAAGGAACTTCGTGGTGGAGTATTTGTAAAATGTCAGAGAG 3579 Query: 239 AGGATCTATTTTAGTCCGTCCCGAC-AACG-ATGAACATCACGAT-ATATTGTGGTGTAA 183 ||||||||||||||||||||||||| ||| || | | ||| | | | |||| | | Sbjct: 3580 AGGATCTATTTTAGTCCGTCCCGACCAACACATTG-CTTGGCGAGCAAAGTCTGGTATTA 3638 >At5g40690 68418.t04600 expressed protein Length = 873 Minus Strand HSPs: Score = 185 (33.8 bits), Expect = 5.9, P = 0.997 Identities = 267/472 (56%), Positives = 267/472 (56%), Strand = Minus / Plus
Border_2 (85904_RB)
ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGA
TTACGCCAAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTATCCGCTCACARTTCCACACAA
CATACATTAWGCMCATGGAAACTATCAGTGTTTGATAACGACAACGATGAACAATTCAGTACATTACTTTGGATCCTACTCTGCACATGAGAGATGTCTT
CACCATCATACTAGGGAAACAATGATGAACATCACAATTTTATTCCACAAATTCCTTTGTATACTACTTATTTTCAAATAAAATCACGTTATTTTTGTAA
TGGTGTTTCACGATTTCTTTACATATGGTAATGGTAATGTTAAACAAGAATAAATATATTTTTAACTCGGATTCGGTTGTAAATCTGTTTTGGTACTCTC
CAGTGGCTTCAATAGGCAATGAAGCAGAAGAGTTGTGTCTATGCATGTTCTTGACGTTAGCTTGTAGCTATCCTGAAAAATAAGTATCCGGTGACTGCTG
TAGCACTTCCAAGCATTCCACCAGCAACGACCTGAATTCTCAGCAAATGGAAAACAGAATCTGATGAGAACTAGAAATTCATTGATATCAACACGGTTAC
AAATCAAAGAGTAGTTCATCTTC
| Start of BLAST Alignment: | NT 3634 / Exon 8 of 8 |
| First 15 bp Perfect Match: | NT 3634 / Exon 8 of 8 |
BLAST Details: Query Sequence: 85904_LB Length: (723 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N F3I6 50826 2286 4.5e-97 1 T2P3 68413 572 1.2e-19 1 T6C20 68339 572 1.2e-19 1 T28G19 68291 572 1.2e-19 1 F3I6 50826 Length = 122,358 Plus Strand HSPs: Score = 2286 (349.0 bits), Expect = 4.5e-97, P = 4.5e-97 Identities = 458/459 (99%), Positives = 458/459 (99%), Strand = Plus / Plus Query: 263 ATTACTTTGGATCCTACTCTGCACATGAGAGATGTCTTCACCATCATACTAGGGAAACAA 322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 118116 ATTACTTTGGATCCTACTCTGCACATGAGAGATGTCTTCACCATCATACTAGGGAAACAA 118175 Query: 323 TGATGAACATCACAATTTTATTCCACAAATTCCTTTGTATACTACTTATTTTCAAATAAA 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 118176 TGATGAACATCACAATTTTATTCCACAAATTCCTTTGTATACTACTTATTTTCAAATAAA 118235 Query: 383 ATCACGTTATTTTTGTAATGGTGTTTCACGATTTCTTTACATATGGTAATGGTAATGTTA 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 118236 ATCACGTTATTTTTGTAATGGTGTTTCACGATTTCTTTACATATGGTAATGGTAATGTTA 118295 Query: 443 AACAAGAATAAATATATTTTTAACTCGGATTCGGTTGTAAATCTGTTTTGGTACTCTCCA 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 118296 AACAAGAATAAATATATTTTTAACTCGGATTCGGTTGTAAATCTGTTTTGGTACTCTCCA 118355 Query: 503 GTGGCTTCAATAGGCAATGAAGCAGAAGAGTTGTGTCTATGCATGTTCTTGACGTTAGCT 562 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 118356 GTGGCTTCAATAGGCAATGAAGCAGAAGAGTTGTGTCTATGCATGTTCTTGACGTTAGCT 118415 Query: 563 TGTAGCTATCCTGAAAAATAAGTATCCGGTGACTGCTGTAGCACTTCCAAGCATTCCACC 622 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 118416 TGTAGCTATCCTGAAAAATAAGTATCCGGTGACTGCTGTAGCACTTCCAAGCATTCCACC 118475 Query: 623 AGCAACGACCTGAATTCTCAGCAAATGGAAAACAGAATCTGATGAGAACTAGAAATTCAT 682 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 118476 AGCAACGACCTGAATTCTCAGCAAATGGAAAACAGAATCTGATGAGAACTAGAAATTCAT 118535 Query: 683 TGATATCAACACGGTTACAAATCAAAGAGTAGTTCATCT 721 ||||||||||||||||||||||||||||||||||||| | Sbjct: 118536 TGATATCAACACGGTTACAAATCAAAGAGTAGTTCATTT 118574 T2P3 68413 Length = 79,192 Minus Strand HSPs: Score = 572 (91.9 bits), Expect = 1.2e-19, P = 1.2e-19 Identities = 130/145 (89%), Positives = 130/145 (89%), Strand = Minus / Plus