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At2g18020 SYNGENTA 86141

Genomic Sequence (from TAIR)

tattctgatattgattcggttagcatccggataaatctgggttgggctttttaacttggtttttctaagaaaaattctaatatgatttggttagcatccg
gattagtctagtttggtaggcctgcctttgtgattcttaactcggtcttttgtatgggtttgaacaattactacaccatttagattcttctgacccatat
caaataaagatccacttaggcccattagggttagaacaaacatgaggttgcagaataaaaagggttcattttcctcactctcaagttggatctcaaaacc
ctaatatctgaacttcgccgtcgagagcatccATGGGTCGTGTCATCAGAGCTCAACGTAAGGGTGCGGGTTCCGTCTTCAAATCCCACACTCACCACCG
CAAAGGTCCGGCTAAGTTCCGTAGCCTCGATTTCGGCGAGAGAAATGGTTACCTCAAGGGCGTCGTGACGGAGATCATCCACGATCCTGGTCGTGGTGCT
CCTCTTGCTCGTGTCACTTTCCGTCATCCTTTCCGTTTCAAGAAACAAAAGGAGCTCTTCGTCGCCGCCGAAGGTATGTACACCGGTCAGTTCTTGTACT
GCGGTAAGAAAGCTACTCTCGTCGTTGGAAATGTTCTCCCTCTTAGATCTATTCCTGAAGGAGCTGTTGTCTGCAACGTCGAGCATCACGTCGGTGATCG
TGGTGTCCTCGCTAGAGCTTCTGGTGATTACGCCATTGTTATCGCTCACAACCCTGACAGCGACACTACTAGgtttgtttctcttatccaaaaatcttct
gaggcttataaacattttcagatctgttgattgtttgttgtagattatgatgatcttaatcagattaattagaaaatgcttatgtatcattggttattta
gtgtagtttatgatgatgttaatggaatcatttcgttaattagaaatgcttgtggtatagttgttgtagtcttgtgaatgatgatttgagtatatgtttg
cgcagGATTAAGTTGCCATCGGGTTCGAAGAAGATTGTCCCAAGTGGATGCAGGGCTATGATTGGACAAGTTGCTGGAGGTGGAAGAACTGAGAAGCCGA
TGCTCAAGGCAGGAAACGCGTACCACAAGTACCGTGTGAAGAGGAACTCATGGCCTAAGGTTCGTGGTGTGGCTATGAATCCAGTGGAGC◄ATCCTCATG
GAGGAGGTAACCATCAGCACATTGGTCACGCCAGTACTGTTAGGCGTGATGCACCTCCTGGACAGAAGGTTGGTCTTATTGCTGCAAGGAGGACTGGTCG
TCTCAGAGGTCAAGCTGCTGCTTCAGCTGCCAAGGCAGACTAGagttaaaagag►ataaactttgtttctcttgttttcta►tgtttcaagttttgttgt
ctgtgtttccttttgaacctcattctgaaatcctaaaagatttttatgataaacctttctctcttctcgaaaagcttatgttattcacattgcatactct
caatacgcaaagttttcattttgtacatatgaaaattatgtaagaacaacgtaaccaattctcgtgatcgttaaagtggtagttgaattgcagattttca
tcgaaacagcagcccgccgcattgctatcacaaagaatcaagtctttggtgttagtcgaattgaagcaatctgaagtacctaaaaaaaaattacaaggaa
tct

Border_1 (86141_AbB_D)


GCTCCACTGGATTCATAGCCACACCACGAACCTTAGGCCATGAGTTCCTCTTCACACGGTACTTGTGGTACGCGTTTCCTGCCTTGAGCATCGGCTTCTC
AGTTCTTCCACCTCCAGCAACTTGTCCAATCATAGCCCTGCATCCACTTGGGACAATCTTCTTCGAACCCGATGGCAACTTAATCCTGCGCAAACATATA
CTCAAATCATCATTCACAAGACTACAACAACTATACCACAAGCATTTCTAATTAACGAAATGATTCCATTAACATCATCATAAACTACACTAAATAACCA
ATGATACATAAGCATTTTCTAATTAATCTGATTAAGATCATCATAATCTACAACAAACAATCAACAGATCTGAAAATGTTTATAAGCCTCAGAAGATTTT
TGGATAAGAGAAACAAACCTAGTAGTGTCGCTGTCAGGGTTGTGAGCGATAACAATGGCGTAATCACCAGAAGCTCTAGCGAGGACACCACGATCACCGA
CGTGATGCTCGACGTTGCAGACAACAGGCTCCTTCAGGAATAGATCTAAGAGGGAGAACATTTCCAACGACGAGAGTAGCTTTCTTACCGCAGTACAAGA
ACTGACCGGTGTACATACCTTCGGCGGCGACGAAGAGCTCCTTTTGTTTCTTGAAACGGAAAGGATGACGGAAAGTGACACGAGCAAGAGGAGCACCACG
ACCAGGATCGGGAGATCTCC

Start of BLAST Alignment:	NT 858 / Exon 2 of 2
First 15 bp Perfect Match:	NT 858 / Exon 2 of 2

BLAST Details:
Query Sequence: 86141_AbB_D 
Length: (720 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At2g18020 68415.t01986 60S ribosomal protein L8 (RPL8A)       3565  2.2e-156  1
At4g36130 68417.t04726 60S ribosomal protein L8 (RPL8C) r...  1244  1.3e-51   1
At3g51190 68416.t05213 60S ribosomal protein L8 (RPL8B) r...  1037  4.2e-42   1
At4g14250 68417.t02082 UBX domain-containing protein low ...   471  1.8e-15   1


>At2g18020 68415.t01986 60S ribosomal protein L8 (RPL8A)
        Length = 1201

  Minus Strand HSPs:

 Score = 3565 (540.9 bits), Expect = 2.2e-156, P = 2.2e-156
 Identities = 719/722 (99%), Positives = 719/722 (99%), Strand = Minus / Plus

Query:   720 GGAGATC-TCC-CGATCCTGGTCGTGGTGCTCCTCTTGCTCGTGTCACTTTCCGTCATCC 663
             ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   185 GGAGATCATCCACGATCCTGGTCGTGGTGCTCCTCTTGCTCGTGTCACTTTCCGTCATCC 244

Query:   662 TTTCCGTTTCAAGAAACAAAAGGAGCTCTTCGTCGCCGCCGAAGGTATGTACACCGGTCA 603
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   245 TTTCCGTTTCAAGAAACAAAAGGAGCTCTTCGTCGCCGCCGAAGGTATGTACACCGGTCA 304

Query:   602 GTTCTTGTACTGCGGTAAGAAAGCTACTCTCGTCGTTGGAAATGTTCTCCCTCTTAGATC 543
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   305 GTTCTTGTACTGCGGTAAGAAAGCTACTCTCGTCGTTGGAAATGTTCTCCCTCTTAGATC 364

Query:   542 TATTCCTGAAGGAGCCTGTTGTCTGCAACGTCGAGCATCACGTCGGTGATCGTGGTGTCC 483
             ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   365 TATTCCTGAAGGAGC-TGTTGTCTGCAACGTCGAGCATCACGTCGGTGATCGTGGTGTCC 423

Query:   482 TCGCTAGAGCTTCTGGTGATTACGCCATTGTTATCGCTCACAACCCTGACAGCGACACTA 423
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   424 TCGCTAGAGCTTCTGGTGATTACGCCATTGTTATCGCTCACAACCCTGACAGCGACACTA 483

Query:   422 CTAGGTTTGTTTCTCTTATCCAAAAATCTTCTGAGGCTTATAAACATTTTCAGATCTGTT 363
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   484 CTAGGTTTGTTTCTCTTATCCAAAAATCTTCTGAGGCTTATAAACATTTTCAGATCTGTT 543

Query:   362 GATTGTTTGTTGTAGATTATGATGATCTTAATCAGATTAATTAGAAAATGCTTATGTATC 303
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   544 GATTGTTTGTTGTAGATTATGATGATCTTAATCAGATTAATTAGAAAATGCTTATGTATC 603

Query:   302 ATTGGTTATTTAGTGTAGTTTATGATGATGTTAATGGAATCATTTCGTTAATTAGAAATG 243
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   604 ATTGGTTATTTAGTGTAGTTTATGATGATGTTAATGGAATCATTTCGTTAATTAGAAATG 663

Query:   242 CTTGTGGTATAGTTGTTGTAGTCTTGTGAATGATGATTTGAGTATATGTTTGCGCAGGAT 183
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   664 CTTGTGGTATAGTTGTTGTAGTCTTGTGAATGATGATTTGAGTATATGTTTGCGCAGGAT 723

Query:   182 TAAGTTGCCATCGGGTTCGAAGAAGATTGTCCCAAGTGGATGCAGGGCTATGATTGGACA 123
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   724 TAAGTTGCCATCGGGTTCGAAGAAGATTGTCCCAAGTGGATGCAGGGCTATGATTGGACA 783

Query:   122 AGTTGCTGGAGGTGGAAGAACTGAGAAGCCGATGCTCAAGGCAGGAAACGCGTACCACAA 63
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   784 AGTTGCTGGAGGTGGAAGAACTGAGAAGCCGATGCTCAAGGCAGGAAACGCGTACCACAA 843

Query:    62 GTACCGTGTGAAGAGGAACTCATGGCCTAAGGTTCGTGGTGTGGCTATGAATCCAGTGGA 3
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   844 GTACCGTGTGAAGAGGAACTCATGGCCTAAGGTTCGTGGTGTGGCTATGAATCCAGTGGA 903

Query:     2 GC 1
             ||
Sbjct:   904 GC 905


>At4g36130 68417.t04726 60S ribosomal protein L8 (RPL8C) ribosomal protein L8,
           cytosolic, tomato, PIR1:R5TOL8
        Length = 1315

  Minus Strand HSPs:

 Score = 1244 (192.7 bits), Expect = 1.3e-51, P = 1.3e-51
 Identities = 494/724 (68%), Positives = 494/724 (68%), Strand = Minus / Plus

Border_2 (86141_LBU)


AATTCA:TTCGGCGTTAATTCAGTACATCAAAAACGTCCGCAATGTGTTATTCTAATATCCGTTAATTCGGTTGGTCTTGTTTCAAGTTTTGTTGTCTGT
GTTTCCTTTTGAACCTCATTCTGAAATCCTAAAAGATTTTTATGATAAACCTTTCTCTCTTCTCGAAAAGCTTATGTTATTCACATTGCATACTCTCAAT
ACGCAAAGTTTTCATTTTGTACATATGAAAATTATGTAAGAACAACGTAACCAATTCTCGTGATCGTTAAAGTGGTAGTTGAATTGCAGATTTTCATCGA
AACAGCAGCCCGCCGCATTGCTATCACAAAGAATCAAGTCTTTGGTGTTAGTCGAATTGAAGCAATCTGAAGTACCTAAAAAAAAATTACAAGGAATCTT
AAAAACGAATCTTGCAGCAAACCTTCAAAATGACACAGAGGACTCAAAGACATTTATGTGCGTAATACAAGTCTGATTCTATAGTTGATTAGCTGAGTTT
TGGTAATGTGTAATATTTGTGTTTATGTGATTGAGATTTACCTAAATTGTCTTTGTCCATCAATTTTTAGCGTTTGAGACTTTGAGGAATTGGTTTTAGT
ATCTGATCCAATAGCTAGATTTGGGTTGCTCTTGCTCTATAATTGTCTTCCAGGTTGAATATGGTCCAAGGATAATTGGTTATCGGCGGCTCTTA

Start of BLAST Alignment:	NT < 11 / 3’ UTR
First 15 bp Perfect Match:	NT < 37 / 3’ UTR

BLAST Details:
Query Sequence: 86141_LBU 
Length: (694 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At2g18020 68415.t01986 60S ribosomal protein L8 (RPL8A)        548  1.5e-19   1
At2g18030 68415.t01987 peptide methionine sulfoxide reduc...   424  1.6e-13   1
At1g69680 68414.t07344 expressed protein similar to MOG1 ...   195  0.84      1
At3g11050 68416.t01190 ferritin, putative similar to ferr...   180  0.99992   1


>At2g18020 68415.t01986 60S ribosomal protein L8 (RPL8A)
        Length = 1201

  Plus Strand HSPs:

 Score = 548 (88.3 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 122/133 (91%), Positives = 122/133 (91%), Strand = Plus / Plus

Query:    55 ATATCCGTTAATTCGGTTGGT--CT-TGTTTCAAGTTTTGTTGTCTGTGTTTCCTTTTGA 111
             |||  | ||  |||  ||| |  || ||||||||||||||||||||||||||||||||||
Sbjct:  1069 ATAAACTTTGTTTCTCTTGTTTTCTATGTTTCAAGTTTTGTTGTCTGTGTTTCCTTTTGA 1128

Query:   112 ACCTCATTCTGAAATCCTAAAAGATTTTTATGATAAACCTTTCTCTCTTCTCGAAAAGCT 171
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1129 ACCTCATTCTGAAATCCTAAAAGATTTTTATGATAAACCTTTCTCTCTTCTCGAAAAGCT 1188

Query:   172 TATGTTATTCACA 184
             |||||||||||||
Sbjct:  1189 TATGTTATTCACA 1201


>At1g69680 68414.t07344 expressed protein similar to MOG1 isoform A
           (GI:9864064) [Homo sapiens]
        Length = 2124

  Plus Strand HSPs:

 Score = 195 (35.3 bits), Expect = 1.9, P = 0.84
 Identities = 133/222 (59%), Positives = 133/222 (59%), Strand = Plus / Plus