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At3g48470 SYNGENTA 87045

Genomic Sequence (from TAIR)
atttaactaaggtctgagatccttggattatcaaacaatatatttcatttcaaagtgaaagaaagaaaattaaatattattcaatatagttgtgctcagg
atcttgttttcaagataatgcggacatagctacagttcctatatagctcgcattgatactcctggccaaggccaagtttgcagagccagtatggtatagg
cttcccatcccaaaaacatttaaaaaatcctcgactttttttttgtaaaataggctctttgtaataacaaatggtcaaactacaaagagcctattggacc
tagaaagattcatttattagaggcccaaaatgattagtttttattgggcctaaagaatttagaaatatgtatgaagtggatctaaaagaggtaaacgacg
acgttttactcttcttcttaaaaattagtctacagacaaattcttctaattttcgctctctccaaacttttccATGGCGGAAGGGACTAAGCAAGAGAG
AACGCTTGAAAACAATTTGCTCCACAAGGTCGGAGAAGCCGTCTCTGCTATTTCTGATGCAAAGCATGTCGACCAAGTGATCTCCGCTATTCATTCC
GTCGCCGTTCTTCTCTTCCCGGTCGATCCATCGTTGTTTTCCGgtaatcaaacaatcacttgttcatctattcttatttcacctcagtcccttctcaatt
caaaagttcagtttttgggctgttttttcgttacgaaatttgttgatatttccaattcaattgcagggagtattggggacaagtacagagaaagggtttg
tatttttaagGAAATTTTGAAATGCTCCACATTGTTCGTGGTTCAGGAACTTTTGGCTTACTTATGATTCTCTATTTGGGCTCCGCACAGGTCTGTAGCT
CTGTAGTTCCTTCTGCAGATGAGAGAAATGAATGGTTGGAGACGTTCTATCGAGGTGTTGCGTTTCCAACGTTTGCTCGAGTTTTGTTGCTTGgtaagct
tttgtcaaatctacatttttgtgattatgtttgtgtgattttcttagcccttgttaatttgagttgtatcaattgttgcaatttggaaattatgtttaac
taattcttgttttattccagATGTTGCTTCGGATTGGCTGTCTTGTTTCCCTATTTCAGTGCAGAAACATTTGTATGATAAGTTCTTCTTAGATGGATCT
GTTATTGAGGTTGTTCAAGTCTTGGTTCCATTTCTACATCATGTGGGAGATGGTGGCGTTAATGCTAATTCTGTCCAGACTAATGTGGAAAGgtactcaa
aaacacacttctgttttggctatttcctttgttcttttccattgagcttctgtttaagaaatgttaagcataaatccatgattcttcaacaacaatttct
gcttcatgacattttacaccattggtagtttcttgtgtattttatcaagtcagcgtagaccaaagttttcacctttcgagtatttgagtcatgtatagga
gtcttctgaatatatctcccaagaattccttttctatttgaccccactggaaaatctgaagatgtagacagtataacactttacttaatggaccaagtag
caattctccatcttgacaatttatctcggtataacactatgaccagtgatatattttgactgtagctgaagcacgtgcaactatttgtatactcttagcc
tgtggtgatgtgattttacttaaatgacagATTGCTTATATTGTGTTTGCTTGAAAATGATGGAGTGCTCAAGATAACTAAAGAAATTGGTAATATTTAT
CAAGGACATAATTCTAGCAATGGAAGTCTCAAGCCTTTATTATCCAGGCTATCACAGATCTTGACCTCCATTCCTGATAAAGCACGgttgaaatcgccac
ctttactttcttctaagtatccttttctctatgaatacagactctaacgccttcaatttgatctcttttatcctctcctaagtaattagataccttttat
tatttttatcaatttctttgaggtcagtgtttatcctttacatgagtcataaagcttgtacttcaagcacattaccaatcagcttctacaaatattggac
gacagGGCTTCCTGCACTGAGGCCAATTGCACAGTTATCGTTTTATCATTTGTCGGGGAAGTTTTTTCCCGCATCTGTCGACGTGGATTATCAGgtatat
atgcttctcgaactgtatttcagctctatttttttcgtttctctgagtgttgtgaattatttttttcgtttctctaagtgttgtgaattaccatggactt
gcttgtattcattttctgtcccttgtaatgggaagttgtgaattgtgagaatgtagatcaaatcatcatgaccgatggggaaaaggatgtgccataatat
aaactacattgcactctgttattgactgataatctctggatggtgtgtttatttattgaagttattttcatgacacaaatcatgatgtactttagattat
attttttaatctgcagATTTGCTGTTAAGTGAAGTAACACCTCATGTCCTAGCTCAAGTTAGGAGGTTACTAAACTCAAAGATAGGTGCTATTGAGGTGG
ATACATTTCAGTTGGACCCTACAACCCGGATTTGGTCGAAAACTATGGAAGCAGTGACAGATCCGTATGCTGTTGAGAAAATGGCTGAACAACTTTTACA
TCAGCTATATGCTGAGCATCCAAGTGATGTTGAAGCTTTCTGGACTATTTGGACTTTGTTTCATCGCAATGTAATACATCAGGCATCAGTGAGGCAAGCA
AAATGTTTTCTATGGCAGCTTGATTCTTTCTTTAGATACCCCTTTTTCTTCTTTCATTTCCATCCTAATGCTGTGAAACAATGCGgttcgacagaagtga
gcatggaactggaactatgatttgtttttttttcaaagggaaacagatttgccgtctattgagttttcccagtttagtctactttgcaaataattgtgta
atttgtttttcaggtcaatattcgttgacaaatttttgctatggaaagtgtttcctatacgttgtcttcgatggatcttacaattttcagTTCTTGAGTG
CCCACCGGTTACTAATACACTTGCTAAAGGTGATGTCACACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGGAGTTTCTG
CAGTCCGTCCAATTGGAGCAGCAAGCTTgtatcctcttctgtgttttaaattttaatagtttttttgttgttgtatcaatattgatggtgaagcaatgtt
ttaaccttcctgctactggtttagACCTTCAGTTCCTGTTTCCCGTAACAGATATATCAGATATAACTGCAGCTCTTGGGCTTTGCCTGGAGAACATGTC
AAGAGAAGAACTAGATAGAACAAAGGATGTAATGCACAGTATTCTTCAAGGAGTTAGCTgtataaacttatctcttttggtatctttgctaaggaactta
aaagcttctgccatcttatttcttgtactttttgttgccaacagGTAGACTGGAGAACCCAGGAGATCTGGTACGGAAAATGGCTAGCTCTATCGCCTTT
ATGTTCTCTAAAGTAATTGACCCGAAGAATCCTCTGTACCTTGATGATTCAATCACTGATAATGCAATTGACTGGGAATTTGGATTGCAAACGGCATCAA
TCACAAATACAATGGAAAATGGAGATGGTGAAAACAAAAGATCAGCCTCCTTAACTGAAGTAAATGAGTCTAGTCGCAGAAACAAGCAAAAGGAAAATCG
CAAGAGTAAGAACATATCTGCTTTTGTATTGGCTGATCCCAATGAAATAGTTGATTTGGCTACGTTAAACTGTGATACGGAGAGTGATAAAGATGATGGC
GATGATGACGCAAGTGTCAGCTCTGATAATTCAAGTGTCACTTCTTTGGAGCCATATGATCTTATGGATGATGATAAGGATTTAGGGAAACAATTTACAC
ATTTGGTGGATGTTGTTGGAGCTCTTAGGAAAACCGATGATGCTGATGGGgtatgtaactagagagcattgtctgtgacattaaactgatgatgctgata
ttcttttattaaaaagcacaagagagtaatctttgtgttatattacgtgttgcagGTGGAGAAAGCTATATATGTTGCAGAGAAACTTGTGCGAGCATCA
CCTGATGAATTGACTCATATAGCTGGTGACCTTGCTCGAACTCTGGTACAGGTTCGCTGCTCTGATATAGCAATCGAAGGTGAAGAAGATTCAGCTGAAG
AAAAGCGGCAAAGAGCTCTAATTGCGTTGCTCGTGACCCGTCCATTTGAATCCCTTGAAACTCTAAACAATATTTTGTATTCGCCTAATGTAGATGTAAG
TCAGCGCATAATGATACTTGATGTCATGGCTGAAGCAGCTAGGGAGCTTGCTAATTCCAAGACCCTGAAACCTAAACACGAAGCACGGGGACCTCTGATA
TCAAATATATCAGATCCTCAACCCTGGTATTTGCCTAGCAATGCGAGTACCCCATGGAAAAAGGTGTCTGAGACAGGATCTTTTCATCTGAACTGGGCAA
ATCGATTTGAGAGAGAGCTACAGTCAAAGCCTGGACAGACAAAGAAAGGAAAATCTCGAAGGTGGAGCCTCAAATCAGCAGACAGAGATCAAAACAGTAC
TGACTGGTCTCAGAATAGATTTCCACTATATGCAGCAGCATTTATGCTTCCAGCCATGAAAGAGTTTGACAAGAAACGACATGGTGTTGACTTACTTGGC
AGGGACTTTGTTGTCCTTGGGAAACTTGTTCACATGCTCGGCGTCTGTATGCAATGTGCATCAATGCATCCAGAAGCATCTGCATTAGCTATCTCTCTTC
TAGATATGTTACAACGAAGgtacatgatgactttgttatctgatagatcttataattaagcttttgcatctatactgaatatttgcatacttgacaaact
caatacagGGAAGTATGCAATCACCCAGAGGCCTATGTCCGAAGAGCGGTCCTTTTTGCAGCCTCTTCTGTTTTGGTTTCTCTTCACCCGTCTTACATAG
TGTCAACCTTGGTTGAAGGAAATCTTGATCTTTCCAGAGCTCTTGAATGGATCAGAACGTGGGCTCTTCAAATAGCTGACTCAGACATCGACCGAGACTG
TTACACGgtaagtcatacattctcccatgggccagcccggatccatctcttattagattttgattatagctaaaggaaataaagagtctgaggtttttga
ttagcttacaacgtgatagaaagttacaacttagcttatgtgttgtgctgtgttatgttgtattagATGGCTTTGTCATGTCTCCAACTCCATGCCGAGA
TGGCTCTTCAAACTTCCCGAGCTTTAGAATCAACTGGTGGAAGTAGCAGCAGCAGTAGCATTAGACCGATGAACATAAGTCTACCTTCGGGTATCTCTAA
ACTGACATCAATCAAACTTCCTTCTTCAAATGTTCATCTCTAGaaacgccattcccattaattcgggtctagtcacttctgtatagtagcatttcttcac
taaagaattcatgtgttcatcgatttttgatatctattacaaagttttgagattagtgattacagagccagataccaaattgatttctctatttatgagt
gaaaaacagcttaacaaatttgattcagcagctgacgattactcaactttagatacgattacagttgctaaaaatagatacttttcatcttccgaatgtt
cagaaatttcccattcagatttctaaactagtcaatgatgcaagcgaaaaaccaatgggttgccactaaacatgattaacaacaggcaacccccgagaaa
aaccagaacaacagttcgatagataaatcaaagaacccgtaaaaagaaagaaatctacgcatagaagaagaaaactcttagagattccataccaactact
aact

Border_1 (87045_RB2)

ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGA
TTACGCCAAGCKCGMAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTATGCATG
CTAGCATATGCCATGGAAACTATCAGTGTTCATCTAACTGCGTGTCTTTGTTCTTGCTTAGTCCCTTCCGCCATGGAAAAGTTTGGAGAGAGCGAAAATT
AGAAGAATTTGTCTGTAGACTAATTTTTAAGAAGAAGAGTAAAACGTCGTCGTTTACCTCTTTTAGATCCACTTCATACATATTTCTAAATTCTTTAGGC
CCAATAAAAACTAATCATTTTGGGCCTCTAATAAATGAATCTTTCTAGGTCCAATAGGCTCTTTGTAGTTTGACCATTTGTTATTACAAAGAGCCTATTT
TACAAAAAAAAAGTCGAGGATTTTTTAAANGTTTTTGGGANGGGAAGCCTATACCATACTGGCTCTGCANCCTTTGGCCC

Start of BLAST Alignment:NT 30 / Exon 1 of 12
First 15 bp Perfect Match:NT 23 / Exon 1 of 12
BLAST Details:
Query Sequence: 87045_RB2 Border #1 
Length: (580 letters) 
Database: TIGR AGI BAC Sequences (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

T29H11 67262                                                  1534  4.1e-63   1
T2P3 68413                                                     568  1.8e-19   1
T6C20 68339                                                    568  1.8e-19   1
T28G19 68291                                                   568  1.8e-19   1
K3K3 67743                                                     201  0.77      1
MUL8 67744                                                     201  0.78      1
F12K21 51940                                                   188  0.998     1



T29H11 67262
        Length = 98,077

  Minus Strand HSPs:

 Score = 1534 (236.2 bits), Expect = 4.1e-63, P = 4.1e-63
 Identities = 318/335 (94%), Positives = 318/335 (94%), Strand = Minus / Plus

Query:   579 GGCCAAAGGNTGCAGAGCCAGTATGGTATAGGCTTCCCNTCCCAAAAACNTTTAAAAAAT 520
             |||||| |  |||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 84017 GGCCAA-GTTTGCAGAGCCAGTATGGTATAGGCTTCCCATCCCAAAAACATTTAAAAAAT 84075

Query:   519 CCTCGACNNNNNNNNNGTAAAATAGGCTCTTTGTAATAACAAATGGTCAAACTACAAAGA 460
             |||||||         ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84076 CCTCGACTTTTTTTTTGTAAAATAGGCTCTTTGTAATAACAAATGGTCAAACTACAAAGA 84135

Query:   459 GCCTATTGGACCTAGAAAGATTCATTTATTAGAGGCCCAAAATGATTAGTTTTTATTGGG 400
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84136 GCCTATTGGACCTAGAAAGATTCATTTATTAGAGGCCCAAAATGATTAGTTTTTATTGGG 84195

Query:   399 CCTAAAGAATTTAGAAATATGTATGAAGTGGATCTAAAAGAGGTAAACGACGACGTTTTA 340
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84196 CCTAAAGAATTTAGAAATATGTATGAAGTGGATCTAAAAGAGGTAAACGACGACGTTTTA 84255

Query:   339 CTCTTCTTCTTAAAAATTAGTCTACAGACAAATTCTTCTAATTTTCGCTCTCTCCAAACT 280
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84256 CTCTTCTTCTTAAAAATTAGTCTACAGACAAATTCTTCTAATTTTCGCTCTCTCCAAACT 84315

Query:   279 TTTCCATGGCGGAAGGGACTAAGCAAGA-ACAAAG 246
             |||||||||||||||||||||||||||| | || |
Sbjct: 84316 TTTCCATGGCGGAAGGGACTAAGCAAGAGAGAACG 84350


T2P3 68413
        Length = 79,192

  Minus Strand HSPs:

 Score = 568 (91.3 bits), Expect = 1.8e-19, P = 1.8e-19
 Identities = 129/145 (88%), Positives = 130/145 (89%), Strand = Minus / Plus


Border_2 (87045_RB1)

ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGA
TTACGCCAAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTATGCATG
CTAGCATATGCCATGGAAACTATCTAATTTGTTTCCATGAAAACAATTTGCTCCACAAGGTCGGAGAAGCCGTCTCTGCTATTTCTGATGCAAAGCATGT
CGACCAAGTGATCTCCGCTATTCATTCCGTCGCCGTTCTTCTCTTCCCGGTCGATCCATCGTTGTTATCCGCTCACAATTCCACACAACATACAAGG

Start of BLAST Alignment:NT 30 / Exon 1 of 12
First 15 bp Perfect Match:NT 32 / Exon 1 of 12
BLAST Details:
Query Sequence: 87045_RB1 
Length: (397 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At3g48470 68416.t04913 expressed protein                       669  1.9e-24   1



>At3g48470 68416.t04913 expressed protein
        Length = 5124

  Plus Strand HSPs:

 Score = 669 (106.4 bits), Expect = 1.9e-24, P = 1.9e-24
 Identities = 139/144 (96%), Positives = 139/144 (96%), Strand = Plus / Plus

Query:   236 CATGAAAACAATTTGCTCCACAAGGTCGGAGAAGCCGTCTCTGCTATTTCTGATGCAAAG 295
             | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:    31 CTTGAAAACAATTTGCTCCACAAGGTCGGAGAAGCCGTCTCTGCTATTTCTGATGCAAAG 90

Query:   296 CATGTCGACCAAGTGATCTCCGCTATTCATTCCGTCGCCGTTCTTCTCTTCCCGGTCGAT 355
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:    91 CATGTCGACCAAGTGATCTCCGCTATTCATTCCGTCGCCGTTCTTCTCTTCCCGGTCGAT 150

Query:   356 CCATCGTTGTTATCCGCTCA-CAA 378
             ||||||||||| |||| | | |||
Sbjct:   151 CCATCGTTGTTTTCCGGTAATCAA 174