At3g48470 SYNGENTA 87045
Genomic Sequence (from TAIR)
atttaactaaggtctgagatccttggattatcaaacaatatatttcatttcaaagtgaaagaaagaaaattaaatattattcaatatagttgtgctcagg atcttgttttcaagataatgcggacatagctacagttcctatatagctcgcattgatactcctggccaaggccaagtttgcagagccagtatggtatagg cttcccatcccaaaaacatttaaaaaatcctcgactttttttttgtaaaataggctctttgtaataacaaatggtcaaactacaaagagcctattggacc tagaaagattcatttattagaggcccaaaatgattagtttttattgggcctaaagaatttagaaatatgtatgaagtggatctaaaagaggtaaacgacg acgttttactcttcttcttaaaaattagtctacagacaaattcttctaattttcgctctctccaaacttttccATGGCGGAAGGGACTAAGCAAGA◄GAG AACG◄►CT►TGAAAACAATTTGCTCCACAAGGTCGGAGAAGCCGTCTCTGCTATTTCTGATGCAAAGCATGTCGACCAAGTGATCTCCGCTATTCATTCC GTCGCCGTTCTTCTCTTCCCGGTCGATCCATCGTTGTTTTCCGgtaatcaaacaatcacttgttcatctattcttatttcacctcagtcccttctcaatt caaaagttcagtttttgggctgttttttcgttacgaaatttgttgatatttccaattcaattgcagggagtattggggacaagtacagagaaagggtttg tatttttaagGAAATTTTGAAATGCTCCACATTGTTCGTGGTTCAGGAACTTTTGGCTTACTTATGATTCTCTATTTGGGCTCCGCACAGGTCTGTAGCT CTGTAGTTCCTTCTGCAGATGAGAGAAATGAATGGTTGGAGACGTTCTATCGAGGTGTTGCGTTTCCAACGTTTGCTCGAGTTTTGTTGCTTGgtaagct tttgtcaaatctacatttttgtgattatgtttgtgtgattttcttagcccttgttaatttgagttgtatcaattgttgcaatttggaaattatgtttaac taattcttgttttattccagATGTTGCTTCGGATTGGCTGTCTTGTTTCCCTATTTCAGTGCAGAAACATTTGTATGATAAGTTCTTCTTAGATGGATCT GTTATTGAGGTTGTTCAAGTCTTGGTTCCATTTCTACATCATGTGGGAGATGGTGGCGTTAATGCTAATTCTGTCCAGACTAATGTGGAAAGgtactcaa aaacacacttctgttttggctatttcctttgttcttttccattgagcttctgtttaagaaatgttaagcataaatccatgattcttcaacaacaatttct gcttcatgacattttacaccattggtagtttcttgtgtattttatcaagtcagcgtagaccaaagttttcacctttcgagtatttgagtcatgtatagga gtcttctgaatatatctcccaagaattccttttctatttgaccccactggaaaatctgaagatgtagacagtataacactttacttaatggaccaagtag caattctccatcttgacaatttatctcggtataacactatgaccagtgatatattttgactgtagctgaagcacgtgcaactatttgtatactcttagcc tgtggtgatgtgattttacttaaatgacagATTGCTTATATTGTGTTTGCTTGAAAATGATGGAGTGCTCAAGATAACTAAAGAAATTGGTAATATTTAT CAAGGACATAATTCTAGCAATGGAAGTCTCAAGCCTTTATTATCCAGGCTATCACAGATCTTGACCTCCATTCCTGATAAAGCACGgttgaaatcgccac ctttactttcttctaagtatccttttctctatgaatacagactctaacgccttcaatttgatctcttttatcctctcctaagtaattagataccttttat tatttttatcaatttctttgaggtcagtgtttatcctttacatgagtcataaagcttgtacttcaagcacattaccaatcagcttctacaaatattggac gacagGGCTTCCTGCACTGAGGCCAATTGCACAGTTATCGTTTTATCATTTGTCGGGGAAGTTTTTTCCCGCATCTGTCGACGTGGATTATCAGgtatat atgcttctcgaactgtatttcagctctatttttttcgtttctctgagtgttgtgaattatttttttcgtttctctaagtgttgtgaattaccatggactt gcttgtattcattttctgtcccttgtaatgggaagttgtgaattgtgagaatgtagatcaaatcatcatgaccgatggggaaaaggatgtgccataatat aaactacattgcactctgttattgactgataatctctggatggtgtgtttatttattgaagttattttcatgacacaaatcatgatgtactttagattat attttttaatctgcagATTTGCTGTTAAGTGAAGTAACACCTCATGTCCTAGCTCAAGTTAGGAGGTTACTAAACTCAAAGATAGGTGCTATTGAGGTGG ATACATTTCAGTTGGACCCTACAACCCGGATTTGGTCGAAAACTATGGAAGCAGTGACAGATCCGTATGCTGTTGAGAAAATGGCTGAACAACTTTTACA TCAGCTATATGCTGAGCATCCAAGTGATGTTGAAGCTTTCTGGACTATTTGGACTTTGTTTCATCGCAATGTAATACATCAGGCATCAGTGAGGCAAGCA AAATGTTTTCTATGGCAGCTTGATTCTTTCTTTAGATACCCCTTTTTCTTCTTTCATTTCCATCCTAATGCTGTGAAACAATGCGgttcgacagaagtga gcatggaactggaactatgatttgtttttttttcaaagggaaacagatttgccgtctattgagttttcccagtttagtctactttgcaaataattgtgta atttgtttttcaggtcaatattcgttgacaaatttttgctatggaaagtgtttcctatacgttgtcttcgatggatcttacaattttcagTTCTTGAGTG CCCACCGGTTACTAATACACTTGCTAAAGGTGATGTCACACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGGAGTTTCTG CAGTCCGTCCAATTGGAGCAGCAAGCTTgtatcctcttctgtgttttaaattttaatagtttttttgttgttgtatcaatattgatggtgaagcaatgtt ttaaccttcctgctactggtttagACCTTCAGTTCCTGTTTCCCGTAACAGATATATCAGATATAACTGCAGCTCTTGGGCTTTGCCTGGAGAACATGTC AAGAGAAGAACTAGATAGAACAAAGGATGTAATGCACAGTATTCTTCAAGGAGTTAGCTgtataaacttatctcttttggtatctttgctaaggaactta aaagcttctgccatcttatttcttgtactttttgttgccaacagGTAGACTGGAGAACCCAGGAGATCTGGTACGGAAAATGGCTAGCTCTATCGCCTTT ATGTTCTCTAAAGTAATTGACCCGAAGAATCCTCTGTACCTTGATGATTCAATCACTGATAATGCAATTGACTGGGAATTTGGATTGCAAACGGCATCAA TCACAAATACAATGGAAAATGGAGATGGTGAAAACAAAAGATCAGCCTCCTTAACTGAAGTAAATGAGTCTAGTCGCAGAAACAAGCAAAAGGAAAATCG CAAGAGTAAGAACATATCTGCTTTTGTATTGGCTGATCCCAATGAAATAGTTGATTTGGCTACGTTAAACTGTGATACGGAGAGTGATAAAGATGATGGC GATGATGACGCAAGTGTCAGCTCTGATAATTCAAGTGTCACTTCTTTGGAGCCATATGATCTTATGGATGATGATAAGGATTTAGGGAAACAATTTACAC ATTTGGTGGATGTTGTTGGAGCTCTTAGGAAAACCGATGATGCTGATGGGgtatgtaactagagagcattgtctgtgacattaaactgatgatgctgata ttcttttattaaaaagcacaagagagtaatctttgtgttatattacgtgttgcagGTGGAGAAAGCTATATATGTTGCAGAGAAACTTGTGCGAGCATCA CCTGATGAATTGACTCATATAGCTGGTGACCTTGCTCGAACTCTGGTACAGGTTCGCTGCTCTGATATAGCAATCGAAGGTGAAGAAGATTCAGCTGAAG AAAAGCGGCAAAGAGCTCTAATTGCGTTGCTCGTGACCCGTCCATTTGAATCCCTTGAAACTCTAAACAATATTTTGTATTCGCCTAATGTAGATGTAAG TCAGCGCATAATGATACTTGATGTCATGGCTGAAGCAGCTAGGGAGCTTGCTAATTCCAAGACCCTGAAACCTAAACACGAAGCACGGGGACCTCTGATA TCAAATATATCAGATCCTCAACCCTGGTATTTGCCTAGCAATGCGAGTACCCCATGGAAAAAGGTGTCTGAGACAGGATCTTTTCATCTGAACTGGGCAA ATCGATTTGAGAGAGAGCTACAGTCAAAGCCTGGACAGACAAAGAAAGGAAAATCTCGAAGGTGGAGCCTCAAATCAGCAGACAGAGATCAAAACAGTAC TGACTGGTCTCAGAATAGATTTCCACTATATGCAGCAGCATTTATGCTTCCAGCCATGAAAGAGTTTGACAAGAAACGACATGGTGTTGACTTACTTGGC AGGGACTTTGTTGTCCTTGGGAAACTTGTTCACATGCTCGGCGTCTGTATGCAATGTGCATCAATGCATCCAGAAGCATCTGCATTAGCTATCTCTCTTC TAGATATGTTACAACGAAGgtacatgatgactttgttatctgatagatcttataattaagcttttgcatctatactgaatatttgcatacttgacaaact caatacagGGAAGTATGCAATCACCCAGAGGCCTATGTCCGAAGAGCGGTCCTTTTTGCAGCCTCTTCTGTTTTGGTTTCTCTTCACCCGTCTTACATAG TGTCAACCTTGGTTGAAGGAAATCTTGATCTTTCCAGAGCTCTTGAATGGATCAGAACGTGGGCTCTTCAAATAGCTGACTCAGACATCGACCGAGACTG TTACACGgtaagtcatacattctcccatgggccagcccggatccatctcttattagattttgattatagctaaaggaaataaagagtctgaggtttttga ttagcttacaacgtgatagaaagttacaacttagcttatgtgttgtgctgtgttatgttgtattagATGGCTTTGTCATGTCTCCAACTCCATGCCGAGA TGGCTCTTCAAACTTCCCGAGCTTTAGAATCAACTGGTGGAAGTAGCAGCAGCAGTAGCATTAGACCGATGAACATAAGTCTACCTTCGGGTATCTCTAA ACTGACATCAATCAAACTTCCTTCTTCAAATGTTCATCTCTAGaaacgccattcccattaattcgggtctagtcacttctgtatagtagcatttcttcac taaagaattcatgtgttcatcgatttttgatatctattacaaagttttgagattagtgattacagagccagataccaaattgatttctctatttatgagt gaaaaacagcttaacaaatttgattcagcagctgacgattactcaactttagatacgattacagttgctaaaaatagatacttttcatcttccgaatgtt cagaaatttcccattcagatttctaaactagtcaatgatgcaagcgaaaaaccaatgggttgccactaaacatgattaacaacaggcaacccccgagaaa aaccagaacaacagttcgatagataaatcaaagaacccgtaaaaagaaagaaatctacgcatagaagaagaaaactcttagagattccataccaactact aact
Border_1 (87045_RB2)
ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGA
TTACGCCAAGCKCGMAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTATGCATG
CTAGCATATGCCATGGAAACTATCAGTGTTCATCTAACTGCGTGTCTTTGTTCTTGCTTAGTCCCTTCCGCCATGGAAAAGTTTGGAGAGAGCGAAAATT
AGAAGAATTTGTCTGTAGACTAATTTTTAAGAAGAAGAGTAAAACGTCGTCGTTTACCTCTTTTAGATCCACTTCATACATATTTCTAAATTCTTTAGGC
CCAATAAAAACTAATCATTTTGGGCCTCTAATAAATGAATCTTTCTAGGTCCAATAGGCTCTTTGTAGTTTGACCATTTGTTATTACAAAGAGCCTATTT
TACAAAAAAAAAGTCGAGGATTTTTTAAANGTTTTTGGGANGGGAAGCCTATACCATACTGGCTCTGCANCCTTTGGCCC
Start of BLAST Alignment: | NT 30 / Exon 1 of 12 |
First 15 bp Perfect Match: | NT 23 / Exon 1 of 12 |
BLAST Details: Query Sequence: 87045_RB2 Border #1 Length: (580 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N T29H11 67262 1534 4.1e-63 1 T2P3 68413 568 1.8e-19 1 T6C20 68339 568 1.8e-19 1 T28G19 68291 568 1.8e-19 1 K3K3 67743 201 0.77 1 MUL8 67744 201 0.78 1 F12K21 51940 188 0.998 1 T29H11 67262 Length = 98,077 Minus Strand HSPs: Score = 1534 (236.2 bits), Expect = 4.1e-63, P = 4.1e-63 Identities = 318/335 (94%), Positives = 318/335 (94%), Strand = Minus / Plus Query: 579 GGCCAAAGGNTGCAGAGCCAGTATGGTATAGGCTTCCCNTCCCAAAAACNTTTAAAAAAT 520 |||||| | |||||||||||||||||||||||||||| |||||||||| |||||||||| Sbjct: 84017 GGCCAA-GTTTGCAGAGCCAGTATGGTATAGGCTTCCCATCCCAAAAACATTTAAAAAAT 84075 Query: 519 CCTCGACNNNNNNNNNGTAAAATAGGCTCTTTGTAATAACAAATGGTCAAACTACAAAGA 460 ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 84076 CCTCGACTTTTTTTTTGTAAAATAGGCTCTTTGTAATAACAAATGGTCAAACTACAAAGA 84135 Query: 459 GCCTATTGGACCTAGAAAGATTCATTTATTAGAGGCCCAAAATGATTAGTTTTTATTGGG 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 84136 GCCTATTGGACCTAGAAAGATTCATTTATTAGAGGCCCAAAATGATTAGTTTTTATTGGG 84195 Query: 399 CCTAAAGAATTTAGAAATATGTATGAAGTGGATCTAAAAGAGGTAAACGACGACGTTTTA 340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 84196 CCTAAAGAATTTAGAAATATGTATGAAGTGGATCTAAAAGAGGTAAACGACGACGTTTTA 84255 Query: 339 CTCTTCTTCTTAAAAATTAGTCTACAGACAAATTCTTCTAATTTTCGCTCTCTCCAAACT 280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 84256 CTCTTCTTCTTAAAAATTAGTCTACAGACAAATTCTTCTAATTTTCGCTCTCTCCAAACT 84315 Query: 279 TTTCCATGGCGGAAGGGACTAAGCAAGA-ACAAAG 246 |||||||||||||||||||||||||||| | || | Sbjct: 84316 TTTCCATGGCGGAAGGGACTAAGCAAGAGAGAACG 84350 T2P3 68413 Length = 79,192 Minus Strand HSPs: Score = 568 (91.3 bits), Expect = 1.8e-19, P = 1.8e-19 Identities = 129/145 (88%), Positives = 130/145 (89%), Strand = Minus / Plus
Border_2 (87045_RB1)
ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGA
TTACGCCAAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTATGCATG
CTAGCATATGCCATGGAAACTATCTAATTTGTTTCCATGAAAACAATTTGCTCCACAAGGTCGGAGAAGCCGTCTCTGCTATTTCTGATGCAAAGCATGT
CGACCAAGTGATCTCCGCTATTCATTCCGTCGCCGTTCTTCTCTTCCCGGTCGATCCATCGTTGTTATCCGCTCACAATTCCACACAACATACAAGG
Start of BLAST Alignment: | NT 30 / Exon 1 of 12 |
First 15 bp Perfect Match: | NT 32 / Exon 1 of 12 |
BLAST Details: Query Sequence: 87045_RB1 Length: (397 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g48470 68416.t04913 expressed protein 669 1.9e-24 1 >At3g48470 68416.t04913 expressed protein Length = 5124 Plus Strand HSPs: Score = 669 (106.4 bits), Expect = 1.9e-24, P = 1.9e-24 Identities = 139/144 (96%), Positives = 139/144 (96%), Strand = Plus / Plus Query: 236 CATGAAAACAATTTGCTCCACAAGGTCGGAGAAGCCGTCTCTGCTATTTCTGATGCAAAG 295 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31 CTTGAAAACAATTTGCTCCACAAGGTCGGAGAAGCCGTCTCTGCTATTTCTGATGCAAAG 90 Query: 296 CATGTCGACCAAGTGATCTCCGCTATTCATTCCGTCGCCGTTCTTCTCTTCCCGGTCGAT 355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 91 CATGTCGACCAAGTGATCTCCGCTATTCATTCCGTCGCCGTTCTTCTCTTCCCGGTCGAT 150 Query: 356 CCATCGTTGTTATCCGCTCA-CAA 378 ||||||||||| |||| | | ||| Sbjct: 151 CCATCGTTGTTTTCCGGTAATCAA 174