PDF Help

At4g29660 SYNGENTA 87112

Genomic Sequence (from TAIR)

tattgctttaaagcaagcttattgatgaagtcatgtgaggttgcataagtctcatttccatagttttggggtaaatttataactttctcaacttaccgaa
cgatagtgaaaaacaaatacatagcacaatggttacaataatcatgtgttgtgattacaatttacaaatttacaagaatcatatcaaataagatttttta
aaaatttacaaatgtgagctcaagacttttaagtgttaaagataagttaagggctgaaaactaaaacatgtaggaataagaggactgtttggtaaacgtt
ttaacgtttaaagtctt◄gcc◄ttttgatatcagatttttctcag►gttcccacgcgccgccgcgaaacagctagacggagaaatccaaaattcggcgaa
ggtttgagaagagagaaatctgagagATGCAAGGAGTGTGGAGCCAACTATGGAGGAAATATGCTGATTATAAGTACAATAAGTTCGAGAGATTTGCTGT
TTGGGAAATGATCGAACCTTACCGTCGACCAAAAACCTTCACAACTTTGATTACTATCTATGTCGCCGCCTTTTACACCGGCGTCATCGGCGCTGCAGTT
ACAGAGCAGCTCTACAAGgtcagcttcgtattgttatcgattcaggcccggaattgctattagatttgtgggttctaatttgattctcgtgattggtaaa
tgttagggttcgaaatgtgataaaattggaaatgattcattgttgattactaataaaggattgtgtgatcatgaaaagaactatacttgaattgcttttc
atgggaatggttcattaggtctttcaatgaagcttttacgtcttgattagtatctaatctaattcattgttctgtagtatattgtattctttgtcaatgt
gtttcttacactgttttgtgttagtatcagttatgtttcttgtttgagtgtgaactttatgttactccactctctgtaaacagGAGAAGTTTTGGGAAGA
GCACCCAGGGAAAACAGTGCCTCTGATGAAGCCAGTATTCTATCGAGGACCATGGAGAGTTTATCGTGGTGAGGCTATTGCTTCAGATGCTAGCAGCCAG
TGAagctaacgattaggctatcagagactatggtgaaggatgtatctccgactttgatacgcagatataaatggatttatactggttcactagtatatgt
atatcaaaaaacttcttttggttcagtagaatgtttgtgtctgtatttcgagtctaatgactctcttaagaatctattttctagaaattacatgtaatga
cagtctcgttatagtataaggatttgatttgagaagtttaagggtatccattcattcctttgaatatctctgcttgtatctgcctctcttctggtgtcct
gaaataaaacattcccaaataagatagatgatctaactacctcagaaacattgagccaacacagatttttctcttcaaattaggttgcttcacattcttt
agtccatatagattcctctggggacgtactctgtttctttccttcctttttttttttgtttgttgcttgtgaaagaatatgacaacctatggcactatac
catcccaagaaaatgcttcgtcgagcctgagcttattaggacgagccaaagaattgatctcgttaggtcttagctctcaaaggccatggcttgaacttgt
ccaatgtagtgcctttagccttcctatctcctttagcgttgccactgaacgaatcaaatccaacatcatgatctttcgaaccaactacattgttatcttc
att

Border_1 (87112_RB2)


ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGA
TTACGCCAAGCKCGMAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTATGCATG
CTAGCATATGCCATGGAAACTATCAGTGTTTGGTAAGACTTTAAACGTTAAAACGTTTACCAAACAGTCCTCTTATTCCTACATGTTTTAGTTTTCAGCC
CTTAACTTATCTTTAACACTTAAAAGTCTTGAGCTCACATTTGTAAATTTTTAAAAAATCTTATTTGATATGATTCTTGTAAATTTGTAAATTGTAATCA
CAACACATGATTATTGTAACCATTGTGCTATGTATTTGTTTTTCACTATCGTTCGGTAAGTTGAGAAGGTTATAAATTTACCCCAAAACTATGGAAATGA
GACTTATGCAACCTCACATGACTTCATCT

Start of BLAST Alignment:	NT < 103 / 5’ UTR
First 15 bp Perfect Match:	NT < 106 / 5’ UTR

BLAST Details:
Query Sequence: 87112_RB2 
Length: (529 letters) 
Database: TIGR AGI BAC Sequences (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

T16L4 67176                                                   1467  4.4e-60   1
T2P3 68413                                                     568  1.8e-19   1
T6C20 68339                                                    568  1.8e-19   1
T28G19 68291                                                   568  1.8e-19   1


T16L4 67176
        Length = 88,011

  Plus Strand HSPs:

 Score = 1467 (226.2 bits), Expect = 4.4e-60, P = 4.4e-60
 Identities = 295/297 (99%), Positives = 295/297 (99%), Strand = Plus / Plus

Query:   232 GGTAAGACTTTAAACGTTAAAACGTTTACCAAACAGTCCTCTTATTCCTACATGTTTTAG 291
             || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45111 GGCAAGACTTTAAACGTTAAAACGTTTACCAAACAGTCCTCTTATTCCTACATGTTTTAG 45170

Query:   292 TTTTCAGCCCTTAACTTATCTTTAACACTTAAAAGTCTTGAGCTCACATTTGTAAATTTT 351
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45171 TTTTCAGCCCTTAACTTATCTTTAACACTTAAAAGTCTTGAGCTCACATTTGTAAATTTT 45230

Query:   352 TAAAAAATCTTATTTGATATGATTCTTGTAAATTTGTAAATTGTAATCACAACACATGAT 411
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45231 TAAAAAATCTTATTTGATATGATTCTTGTAAATTTGTAAATTGTAATCACAACACATGAT 45290

Query:   412 TATTGTAACCATTGTGCTATGTATTTGTTTTTCACTATCGTTCGGTAAGTTGAGAAGGTT 471
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 45291 TATTGTAACCATTGTGCTATGTATTTGTTTTTCACTATCGTTCGGTAAGTTGAGAAAGTT 45350

Query:   472 ATAAATTTACCCCAAAACTATGGAAATGAGACTTATGCAACCTCACATGACTTCATC 528
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45351 ATAAATTTACCCCAAAACTATGGAAATGAGACTTATGCAACCTCACATGACTTCATC 45407


T2P3 68413
        Length = 79,192

  Minus Strand HSPs:

 Score = 568 (91.3 bits), Expect = 1.8e-19, P = 1.8e-19
 Identities = 129/145 (88%), Positives = 130/145 (89%), Strand = Minus / Plus

Border_2 (87112_RB1)


ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGA
TTACGCCAAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTATGCATG
CTAGCATATGCCATGGAAACTATCAGTGTTTGTTCCCACGCGCCGCCGCGAAACAGCTAGACGGAGAAATCCAAAATTCGGCGAAGGTTTGAGAAGAGAG
AAATCTGAGAGATGCAAGGAGTGTGGAGCCAACTATGGAGGAAATATGCTGATTATAAGTACAATAAGTTCGAGAGATTTGCTGTTTGGGAAATGATCGA
ACCTTACCGTCGACCAAAAACCTTCACAACTTTGATTACTATCTATGTCGCCGCCTTTTACACCGGCGTCATCGGCGCTGCAGTTACAGAGCAGCTCTAC
AAGGTCAGCTTCGTATTGTTATCGATTCAGGCCCGGAATTGCTATTAGATTTGTGGGTTCTAATTTGATTCTCGTGATTGGTAAATGTTAGGGTTCGAAA
TGTGATAAAATTGGAAATGATTCATTGTTGATTACTAATAAAGGATTGTGTGATCATGAAAAGAACTATACTTGAATTGCTTTTCATGGGAATGGTTCAT
TAGGTCTTTCAATGAAGCTTTTACGTCTTGATTAGTATCTAATCTAATTCATTGTTCTGTAGTATATTGTATTCTTTGTCAATGCGCTTCTTACACTGTT
TTGTGTT

Start of BLAST Alignment:	NT < 80 / 5’ UTR
First 15 bp Perfect Match:	NT < 80 / 5’ UTR

BLAST Details:
Query Sequence: 87112_RB1 
Length: (807 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At4g29660 68417.t03923 expressed protein predicted protei...  2862  1.4e-124  1
At1g51200 68414.t05280 zinc finger (AN1-like) family prot...   193  0.96      1
At2g37080 68415.t04201 myosin heavy chain-related low sim...   191  0.98      1
At2g19360 68415.t02143 hypothetical protein contains Pfam...   185  0.9997    1


>At4g29660 68417.t03923 expressed protein predicted proteins, Arabidopsis
           thaliana
        Length = 1030

  Plus Strand HSPs:

 Score = 2862 (435.5 bits), Expect = 1.4e-124, P = 1.4e-124
 Identities = 574/576 (99%), Positives = 574/576 (99%), Strand = Plus / Plus

Query:   232 GTTCCCACGCGCCGCCGCGAAACAGCTAGACGGAGAAATCCAAAATTCGGCGAAGGTTTG 291
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:    42 GTTCCCACGCGCCGCCGCGAAACAGCTAGACGGAGAAATCCAAAATTCGGCGAAGGTTTG 101

Query:   292 AGAAGAGAGAAATCTGAGAGATGCAAGGAGTGTGGAGCCAACTATGGAGGAAATATGCTG 351
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   102 AGAAGAGAGAAATCTGAGAGATGCAAGGAGTGTGGAGCCAACTATGGAGGAAATATGCTG 161

Query:   352 ATTATAAGTACAATAAGTTCGAGAGATTTGCTGTTTGGGAAATGATCGAACCTTACCGTC 411
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   162 ATTATAAGTACAATAAGTTCGAGAGATTTGCTGTTTGGGAAATGATCGAACCTTACCGTC 221

Query:   412 GACCAAAAACCTTCACAACTTTGATTACTATCTATGTCGCCGCCTTTTACACCGGCGTCA 471
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   222 GACCAAAAACCTTCACAACTTTGATTACTATCTATGTCGCCGCCTTTTACACCGGCGTCA 281

Query:   472 TCGGCGCTGCAGTTACAGAGCAGCTCTACAAGGTCAGCTTCGTATTGTTATCGATTCAGG 531
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   282 TCGGCGCTGCAGTTACAGAGCAGCTCTACAAGGTCAGCTTCGTATTGTTATCGATTCAGG 341

Query:   532 CCCGGAATTGCTATTAGATTTGTGGGTTCTAATTTGATTCTCGTGATTGGTAAATGTTAG 591
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   342 CCCGGAATTGCTATTAGATTTGTGGGTTCTAATTTGATTCTCGTGATTGGTAAATGTTAG 401

Query:   592 GGTTCGAAATGTGATAAAATTGGAAATGATTCATTGTTGATTACTAATAAAGGATTGTGT 651
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   402 GGTTCGAAATGTGATAAAATTGGAAATGATTCATTGTTGATTACTAATAAAGGATTGTGT 461

Query:   652 GATCATGAAAAGAACTATACTTGAATTGCTTTTCATGGGAATGGTTCATTAGGTCTTTCA 711
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   462 GATCATGAAAAGAACTATACTTGAATTGCTTTTCATGGGAATGGTTCATTAGGTCTTTCA 521

Query:   712 ATGAAGCTTTTACGTCTTGATTAGTATCTAATCTAATTCATTGTTCTGTAGTATATTGTA 771
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   522 ATGAAGCTTTTACGTCTTGATTAGTATCTAATCTAATTCATTGTTCTGTAGTATATTGTA 581

Query:   772 TTCTTTGTCAATGCGCTTCTTACACTGTTTTGTGTT 807
             ||||||||||||| | ||||||||||||||||||||
Sbjct:   582 TTCTTTGTCAATGTGTTTCTTACACTGTTTTGTGTT 617


>At1g51200 68414.t05280 zinc finger (AN1-like) family protein contains Pfam
           domains, PF01428: AN1-like Zinc finger and PF01754: A20-like zinc
           finger
        Length = 2135

  Plus Strand HSPs:

 Score = 193 (35.0 bits), Expect = 3.1, P = 0.96
 Identities = 187/317 (58%), Positives = 187/317 (58%), Strand = Plus / Plus