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At1g43710 SYNGENTA 8794

Genomic Sequence (from TAIR)

ctaaaatcctaaacgttcatatctaatcaaactaaacgtacattaatttcaaatcactagttttgaaatttggaccaaagttttaattattgttaaacaa
aaaactcttctcgatttagttttagtaattaattaaaaaaataatcatgtatgaatctcatggcaagttggtaaccttttaatttatttacataaagaaa
taaatcaaatctcatgactacctttaaaaaacattattataaaaaaagaaaaatataaaaatctcacgaacaacaacaacaacacacacaagtgactacg
aaagggcaaaaaccaaaaagagaatcaaattttgcctcttctatataaatcaaatcaacgacgaagcgtcgctctcgttttctgtgtgtctctctctttg
tcccaccattttcaccgcttctcctccaatcactcagatctacagattcctttaaaacaacaATGGTTGGATCTTTGGAATCTGATCAAACTCTTTCAAT
GGCCACCTTAATCGAAAAACTCGACATCTTATCTGACGACTTCGATCCAACCGCCGTAGTCACCGAACCGTTACCTCCTCCGGTAACTAATGGAATCGGA
GCTGATAAAGGAGGAGGAGGAGGAGAAAGAGAGATGGTTCTCGGTAGGAATATACACACAACGTCACTCGCTGTAACGGAACCGGAGGTTAACGATGAAT
TCACCGGAGATAAAGAAGCTTATATGGCTAGTGTTCTTGCTCGTTACCGGAAAACTTTGGTTGAACGAACCAAAAACCATTTAGgtaaaatttgatctga
tctgatctttttttttgaatcggaatcggaatctgaatcggaatctggtgtagGTTATCCTTATAACTTGGATTTCGACTATGGTGCGCTTGGTCAGTTA
CAACATTTTTCGATTAATAATCTTGGAGATCCGTTTATTGAAAGTAACTATGGTGTACACTCAAGACCTTTTGAAGTTGGTGTGTTGGATTGGTTTGCTC
GTCTTTGGGAGATTGAGAGAGATGATTATTGGGGTTACATTACCAATTGTGGTACTGAAGGCAACCTTCATGGCATTTTAGTCGGgtacgtttttcgaaa
atcatcggtgttttgattcattcgaaaaaccgaaaaaaaacggtgtttgatttgatgtgtgtttgtagGAGGGAGATGTTTCCGGATGGGATATTGTATG
CGTCGCGTGAATCGCATTACTCGGTGTTTAAAGCTGCTCGAATGTATCGAATGGAGTGTGAGAAGGTTGATACGCTTATGTCAGGGGAGATTGA◄TTGTG
ATGATTTGAGGAAGAAGTT►GTTGG►CTAATAAAGATAAACCGGCGATTCTTAATGTTAACATAGgttggtttatgttttagtactttggctttgtttgt
tgtgttaggattggtgctaatggttgaaatcttgttttctttagGAACGACGGTTAAAGGAGCTGTTGATGATCTTGACCTTGTTATCAAAACTCTTGAA
GAGTGTGGTTTCTCACATGATAGGTTCTATATTCATTGTGATGGAGCTTTGTTTGGACTTATGATGCCTTTTGTCAAACGTgtaagtgtatagtcttcag
tctaagcgaaatcgttatgataatctttgttctgctctgagatttgttgttttatctcctctgtagGCACCGAAAGTGACGTTTAATAAACCGATAGGGA
GTGTGAGTGTATCGGGCCACAAATTTGTCGGGTGTCCAATGCCATGTGGTGTTCAGATAACAAGAATGGAACATATCAAAGTCCTCTCCAGTAACGTTGA
GTACCTTGCTTCAAGGGATGCAACAATCATGGGAAGTCGTAACGGGCATGCTCCTTTGTTCCTCTGGTACACCTTAAACAGGAAAGGTTACAAAGGATTC
CAGAAAGAAGTTCAGAAATGCTTGAGAAACGCGCATTACCTCAAAGACCGACTTCGTGAAGCTGGGATTAGCGCCATGCTTAATGAGCTTAGCAGCACTG
TGGTCTTTGAACGGCCTAAAGATGAAGAGTTTGTTAGAAGGTGGCAGCTTGCTTGCCAAGGTGATATAGCTCATGTGGTGGTTATGCCAAGTGTTACAAT
CGAGAAGCTTGATAATTTCCTGAAAGACCTTGTCAAACACAGATTGATCTGGTACGAGGATGGATCTCAGCCTCCTTGCCTTGCATCGGAGGTAGGAACC
AACAACTGCATCTGTCCAGCTCACAAGTGAcggcaccatttctcatttgttggtattgttgttttctagtaagccacatctagtttaaattcctcatcac
tgtattcctgaacttggtttcaatcatcgtaaaattttgtcagtttctcttatttacaagttaaggtttcaaacagtgtttacaatttgtagctcaatct
ggagcatgatcaaccttcacttcgtcgttcgcaatcgtttaccgagttttagcattatcgtaacagcaagtatgtgccttaagccgctgatttagctgcg
tgtttgatgatcggtgcttaatgcctaggaaaagtgcttactataaagatttttgggtagtatattacaatggatactacttgtaaagatagaccgatgt
cgccatgaacatatctgcatagacgctaacaacacaaaagccattatacatggatacatacatactttttacatacatcaaatattgcagcccgaaatga
ata

Border_1 (8794_LB2U)


AATCTCGATACACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATCTCCCCTGA
CATAAGCGTATCAACCTTCTCACACTCCATTCGATACATTCGAGCAGCTTTAAACACCAAAACTCGACAATTCACGCAGACGCATACAATATCCCATCCG
GAAACATCTCCCTCCTACAAACACACATCAAATCAAACACCGTTTTTTTTCGGTTTTTCGAATGAATCAAAACACCGATGATTTTCGAAAAACGTACCCG
ACTAAAATGCCATGAAGGTTGCCTTCAGTACCACAATTGGTAATGTAACACCAAAACTCGA

Start of BLAST Alignment:	NT 832 / Exon 3 of 5
First 15 bp Perfect Match:	NT 832 / Exon 3 of 5

BLAST Details:
Query Sequence: 8794_LB2U 
Length: (361 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At1g43710 68414.t04583 serine decarboxylase identical to ...  1135  1.0e-46   1
At2g10070 68415.t00979 expressed protein very low similar...   172  0.93      1


>At1g43710 68414.t04583 serine decarboxylase identical to serine decarboxylase
           [Arabidopsis thaliana] GI:15011302; contains Pfam profile PF00282:
           Pyridoxal-dependent decarboxylase conserved domain
        Length = 2065

  Minus Strand HSPs:

 Score = 1135 (176.3 bits), Expect = 1.0e-46, P = 1.0e-46
 Identities = 247/274 (90%), Positives = 247/274 (90%), Strand = Minus / Plus

Query:   359 GAGTTTTGGTGTTACATTACCAATTGTGGTACTGAAGGCAACCTTCATGGCATTTTAGTC 300
             || | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   648 GATTATTGGGGTTACATTACCAATTGTGGTACTGAAGGCAACCTTCATGGCATTTTAGTC 707

Query:   299 GGGTACGTTTTTCGAAAATCATCGGTGTTTTGATTCATTCGNNNNNNNNNNNNNNNNCGG 240
             |||||||||||||||||||||||||||||||||||||||||                |||
Sbjct:   708 GGGTACGTTTTTCGAAAATCATCGGTGTTTTGATTCATTCGAAAAACCGAAAAAAAACGG 767

Query:   239 TGTTTGATTTGATGTGTGTTTGTAGGAGGGAGATGTTTCCGGATGGGATATTGTATGCGT 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   768 TGTTTGATTTGATGTGTGTTTGTAGGAGGGAGATGTTTCCGGATGGGATATTGTATGCGT 827

Query:   179 CTGCGTGAATTGTCGAGTTTT-GGTGTTTAAAGCTGCTCGAATGTATCGAATGGAGTGTG 121
             | |||||||| | | | |  | ||||||||||||||||||||||||||||||||||||||
Sbjct:   828 C-GCGTGAATCG-C-ATTACTCGGTGTTTAAAGCTGCTCGAATGTATCGAATGGAGTGTG 884

Query:   120 AGAAGGTTGATACGCTTATGTCAGGGGAGATTGA 87
             ||||||||||||||||||||||||||||||||||
Sbjct:   885 AGAAGGTTGATACGCTTATGTCAGGGGAGATTGA 918


>At2g10070 68415.t00979 expressed protein very low similarity to AHM1 [Triticum
           aestivum] GI:6691467
        Length = 1922

  Minus Strand HSPs:

 Score = 172 (31.9 bits), Expect = 2.7, P = 0.93
 Identities = 134/218 (61%), Positives = 134/218 (61%), Strand = Minus / Plus

Border_2 (8794_LBD)


AACCAATCTCGATACACCAAATC:AATTCA:TTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAAGTTGTC
TAATAAAGATAAACCGGCGATTCTTAATGTTAACATAGGTTGGTTTATGTTTTAGTACTTTGGCTTTGTTTGTTGTGTTAGGATTGGTGCTAATGGTTGA
AATCTTGTTTTCTTTAGGAACGACGGTTAAAGGAGCTGTTGATGATCTTGACCTTGTTATCAAAACTCTTGAAGAGTGTGGTTTCTCACATGATAGGTTC
TATATTCATTGTGATGGAGCTTTGTTTGGACTTATGATGCCTTTTGTCAAACGTGTAAGTGTATAGTCTTCAGTCTAAGCGAAATCGTTATGATAATCTT
TGTTCTGCTCTGAGATTTGTTGTTTTATCTCCTCTGTAGGCACCGAAAGTGACGTTTAATAAACCGATAGGGAGTGTGAGTGTATCGGGCCACAAATTTG
TCGGGTGTCCAATGCCATGTGGTGTTCAGATAACAAGAATGGAACATATCAAAGTCCTCTCCAGTAACGTTGAGTACCTTGCTTCAAGGGATGCAACAAT
CATGGGAAGTCGTAACGGGCATGCTCCTTTGTTCCCTTCTGCTACC

Start of BLAST Alignment:	NT 857 / Exon 3 of 5
First 15 bp Perfect Match:	NT 862 / Exon 3 of 5

BLAST Details:
Query Sequence: 8794_LBD 
Length: (644 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At1g43710 68414.t04583 serine decarboxylase identical to ...  2707  7.1e-118  1
At1g49700 68414.t05099 expressed protein ; expression sup...   224  0.058     1
At5g62440 68418.t07238 expressed protein                       197  0.70      1
At1g57990 68414.t06018 purine permease-related low simila...   189  0.94      1


>At1g43710 68414.t04583 serine decarboxylase identical to serine decarboxylase
           [Arabidopsis thaliana] GI:15011302; contains Pfam profile PF00282:
           Pyridoxal-dependent decarboxylase conserved domain
        Length = 2065

  Plus Strand HSPs:

 Score = 2707 (412.2 bits), Expect = 7.1e-118, P = 7.1e-118
 Identities = 547/551 (99%), Positives = 547/551 (99%), Strand = Plus / Plus

Query:    93 GTTGTCTAATAAAGATAAACCGGCGATTCTTAATGTTAACATAGGTTGGTTTATGTTTTA 152
             |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   943 GTTGGCTAATAAAGATAAACCGGCGATTCTTAATGTTAACATAGGTTGGTTTATGTTTTA 1002

Query:   153 GTACTTTGGCTTTGTTTGTTGTGTTAGGATTGGTGCTAATGGTTGAAATCTTGTTTTCTT 212
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1003 GTACTTTGGCTTTGTTTGTTGTGTTAGGATTGGTGCTAATGGTTGAAATCTTGTTTTCTT 1062

Query:   213 TAGGAACGACGGTTAAAGGAGCTGTTGATGATCTTGACCTTGTTATCAAAACTCTTGAAG 272
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1063 TAGGAACGACGGTTAAAGGAGCTGTTGATGATCTTGACCTTGTTATCAAAACTCTTGAAG 1122

Query:   273 AGTGTGGTTTCTCACATGATAGGTTCTATATTCATTGTGATGGAGCTTTGTTTGGACTTA 332
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1123 AGTGTGGTTTCTCACATGATAGGTTCTATATTCATTGTGATGGAGCTTTGTTTGGACTTA 1182

Query:   333 TGATGCCTTTTGTCAAACGTGTAAGTGTATAGTCTTCAGTCTAAGCGAAATCGTTATGAT 392
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1183 TGATGCCTTTTGTCAAACGTGTAAGTGTATAGTCTTCAGTCTAAGCGAAATCGTTATGAT 1242

Query:   393 AATCTTTGTTCTGCTCTGAGATTTGTTGTTTTATCTCCTCTGTAGGCACCGAAAGTGACG 452
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1243 AATCTTTGTTCTGCTCTGAGATTTGTTGTTTTATCTCCTCTGTAGGCACCGAAAGTGACG 1302

Query:   453 TTTAATAAACCGATAGGGAGTGTGAGTGTATCGGGCCACAAATTTGTCGGGTGTCCAATG 512
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1303 TTTAATAAACCGATAGGGAGTGTGAGTGTATCGGGCCACAAATTTGTCGGGTGTCCAATG 1362

Query:   513 CCATGTGGTGTTCAGATAACAAGAATGGAACATATCAAAGTCCTCTCCAGTAACGTTGAG 572
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1363 CCATGTGGTGTTCAGATAACAAGAATGGAACATATCAAAGTCCTCTCCAGTAACGTTGAG 1422

Query:   573 TACCTTGCTTCAAGGGATGCAACAATCATGGGAAGTCGTAACGGGCATGCTCCTTTGTTC 632
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1423 TACCTTGCTTCAAGGGATGCAACAATCATGGGAAGTCGTAACGGGCATGCTCCTTTGTTC 1482

Query:   633 CCTTCTGCTAC 643
             | | ||| |||
Sbjct:  1483 C-T-CTGGTAC 1491


>At1g49700 68414.t05099 expressed protein ; expression supported by MPSS
        Length = 1517

  Plus Strand HSPs:

 Score = 224 (39.7 bits), Expect = 0.059, P = 0.058
 Identities = 216/376 (57%), Positives = 216/376 (57%), Strand = Plus / Plus