At4g11150 SYNGENTA 88248
Genomic Sequence (from TAIR)
acaacaactgcattgcagtgaatttcatcaaaatccattaaaacatttccaaactcaaatagaaacaacttcaaaaccttaatccaaaatgttatagata gatatgcaatagctcttaggcctagtacatagctagatcttgtaactcgtgaaggcaaatgattgggacgttggttcggttctagtggtcgggctcagcc tggcggaaaaaattgttatgggtctaaggcccataaagtggcccagaaataaactcgtcgtatttacacacgttgtcgtttctcttatcttctagaaaac tgtatcccgtttttgttcttgtactctacacaaacagacaacttcaaattactcaacaccacgtcgtgaaaatccgatctacgtctctgtctctctccaa tctctctgcgccacagaattgtgcgatttacgaaaatctctgaaacctccgatcgttaacggcgaccgccgattttcccggtaaaaATGAACGACGGAGA TGTATCGAGGCAGATCCAGCAGATGGTGAGATTTATCCGCCAAGAAGCGGAAGAGAAAGCAAACGAGATCTCGGTTTCTGCTGAAGAAgtatgatcttta gtgtttctgtttccatttatcagatcttatgatatgaatctctaattcaatcgtaagcggtttatctgattgttatcgatttggtttatttgaataatcg tagGAATTCAACATTGAGAAACTCCAGCTTGTTGAGGCGGAGAAGAAGAAGATCAGGCAAGATTATGAGAAGAAGGAGAAGCAAGCTGATGTTCGCAAGA AGATgtgagttttctgatttcaatttttttgatcttggttaagttttaagttagatcgcttgttctggattacaatatctctgaactttgaaaaaattag aagtttatgatttatagatttgaagttttgacttgattgatttcaaacttgtaattttcttcattgatgaataagaaacatagtctggtttagtctaatc ggcaaaactgaagactaatttagcaattagtctgatgtaagattatggtgtagtagtgtactgtgttgatctagctttcaaattctctaatattgttagt tctctgtgaaaattatgttgatcttgttcatttactgtgttatcgtgtattactttgccagaaaataactgtcatacatgttttttcagTGATTACTCTA TGCAGCTAAATGCATCAAGGATCAAAGTTCTTCAAGCGCAAGACGATATTGTCAATGCCATGAAAGACCAAGCAGCTAAGGATCTTCTGAACGTTAGTCG CGATGAGTATGCCTACAAACAGCTCCTCAAGGATCTAATTGTTCAGgttggtacttaaaacaaatccctgatgcattcaaataaatatttgatatttgga acttttttttgtatatcctactggagattatgtaa◄tcgtgtcggatggcaatctttttttgtgtgttttgatccgttctgctgatgtcattttgcattt cgaataccttttggtctgttaaagattctctcttgaattgttgcagTGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCGTGAAGAGGAC TTGGGTTTAGTGGAAGCTGTACTTGATGACGCAAAGGAGGAATATGCTGGTAAAGCAAAGGTTCATGCCCCAGAGGTTGCTGTTGACACAAAAATATTCC TTCCCCCTCCTCCTAAATCTAATGATCCTCATGGTCTCCACTGgtaaaatttca►tgtttctcatcattactttacatttaaatttttataaaagaacat tatcagtgtttagatccggtttgatagtgtattttgaacatgtaatagCTCTGGAGGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCGTGTGCGAGAAC ACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTGgtatgaaaaacaaattctctaccgcatagattacttgttatgatccatcact cactgtctaggtttacttttttactttggttctctgattcactcattgttgttaacagATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGAtgaaag aaaggaaaagagaaaagagattattcaaaccggtttgcgtttggttatttacctattttgggagagatttctctttgttgtgattctttgtattttgcaa aatcttactttggtgccaaacccatcgaacgcttctttttttcgaattcctttttttcattcctcctcgaatgtgtgttatcatggctatacaaataaat aaaatgaaagacttcttttctttttcttcactttttctattcaatgtctatgctttatactagtggtttttcgtcatcatagataaacacttaattcata aaaagacccttgaatttttattataaggttagcaatttatccaacacgatcctgaaaatcgtccatcctagtatttttttcgtctaaacacctttaattg cggagttttgataagtttttaacagaaaaaaactcgaataagatatttttttggtttgggctaaaattgttatagacttggcccttgggttttatcccaa atacattttaggtatcacaaacaagaaaaacatagaagtaaaaaactagaagttttttgcgcttttgatctttgtccttttttctacaagttttttctcc ag
Border_1 (88248_AbBD)
TTACATAATCTCCAGTAGGATATACAAAAAAAAGTTCCAAATATCAAATATTTATTTGAATGCATCAGGGATTTGTTTTAAGTACCAACCTGAACAATTA
GATCCTTGAGGAGCTGTTTGTAGGCATACTCATCGCGACTAACGTTCAGAAGATCCTTAGCTGCTTGGTCTTTCATGGCATTGACAATATCGTCTTGCGC
TTGAAGAACTTTGATCCTTGATGCATTTAGCTGCATAGAGTAATCACTGAAAAAACATGTATGACAGTTATTTTCTGGCAAAGTAATACACGATAACACA
GTAAATGAACAAGATCAACATAATTTTCACAGAGAACTAACAATATTAGAGAATTTGAAAGCTAGATCAACACAGTACACTACTACACCATAATCTTACA
TCAGACTAATTGCTAAATTAGTCTTCAGTTTTGCCGATTAGACTAAACCAGACTATGTTTCTTATTCATCAATGAAGAAAATTACAAGTTTGAAATCAAT
CAAGGTCAAAACTTCAAATCTATAAATCATAAACTTCTAATTTTTTCAAAGTTCAGAGATATTGTAATCCAGAACAAGCGATCTAACTTAAAACTTAACC
AAGATCAAAAAAATTGAAATCAGAAAACTCACATCTTCTTGCGAACATCAGCTTGCTTCTCCTTCTTCTCATAATCTTGCCTGATCTTCGGCTTCTCCAA
A
| Start of BLAST Alignment: | NT 949 / Intron 3 of 5 |
| First 15 bp Perfect Match: | NT 949 / Intron 3 of 5 |
BLAST Details: Query Sequence: 88248_AbBD Length: (701 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g11150 68417.t01717 vacuolar ATP synthase subunit E / ... 3401 3.4e-149 1 At1g64200 68414.t06659 vacuolar ATP synthase subunit E, p... 448 1.1e-14 1 At3g08560 68416.t00890 vacuolar ATP synthase subunit E, p... 444 2.1e-14 1 At4g13760 68417.t02025 glycoside hydrolase family 28 prot... 270 0.00040 1 >At4g11150 68417.t01717 vacuolar ATP synthase subunit E / V-ATPase E subunit / vacuolar proton pump E subunit (VATE) identical to SP|Q39258 Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump E subunit) {Arabidopsis thaliana} Length = 1970 Minus Strand HSPs: Score = 3401 (516.3 bits), Expect = 3.4e-149, P = 3.4e-149 Identities = 687/698 (98%), Positives = 687/698 (98%), Strand = Minus / Plus Query: 698 GGAGAAGCCGAAGATCAGGCAAGATTATGAGAAGAAGGAGAAGCAAGCTGATGTTCGCAA 639 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 382 GGAGAAGAAGAAGATCAGGCAAGATTATGAGAAGAAGGAGAAGCAAGCTGATGTTCGCAA 441 Query: 638 GAAGATGTGAGTTTTCTGATTTCAATTTTTTTGATCTTGGTTAAGTTTTAAGTTAGATCG 579 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 442 GAAGATGTGAGTTTTCTGATTTCAATTTTTTTGATCTTGGTTAAGTTTTAAGTTAGATCG 501 Query: 578 CTTGTTCTGGATTACAATATCTCTGAACTTTGAAAAAATTAGAAGTTTATGATTTATAGA 519 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 502 CTTGTTCTGGATTACAATATCTCTGAACTTTGAAAAAATTAGAAGTTTATGATTTATAGA 561 Query: 518 TTTGAAGTTTTGACCTTGATTGATTTCAAACTTGTAATTTTCTTCATTGATGAATAAGAA 459 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 562 TTTGAAGTTTTGAC-TTGATTGATTTCAAACTTGTAATTTTCTTCATTGATGAATAAGAA 620 Query: 458 ACATAGTCTGGTTTAGTCTAATCGGCAAAACTGAAGACTAATTTAGCAATTAGTCTGATG 399 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 621 ACATAGTCTGGTTTAGTCTAATCGGCAAAACTGAAGACTAATTTAGCAATTAGTCTGATG 680 Query: 398 TAAGATTATGGTGTAGTAGTGTACTGTGTTGATCTAGCTTTCAAATTCTCTAATATTGTT 339 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 681 TAAGATTATGGTGTAGTAGTGTACTGTGTTGATCTAGCTTTCAAATTCTCTAATATTGTT 740 Query: 338 AGTTCTCTGTGAAAATTATGTTGATCTTGTTCATTTACTGTGTTATCGTGTATTACTTTG 279 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 741 AGTTCTCTGTGAAAATTATGTTGATCTTGTTCATTTACTGTGTTATCGTGTATTACTTTG 800 Query: 278 CCAGAAAATAACTGTCATACATGTTTTTTCAGTGATTACTCTATGCAGCTAAATGCATCA 219 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 801 CCAGAAAATAACTGTCATACATGTTTTTTCAGTGATTACTCTATGCAGCTAAATGCATCA 860 Query: 218 AGGATCAAAGTTCTTCAAGCGCAAGACGATATTGTCAATGCCATGAAAGACCAAGCAGCT 159 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 861 AGGATCAAAGTTCTTCAAGCGCAAGACGATATTGTCAATGCCATGAAAGACCAAGCAGCT 920 Query: 158 AAGGATCTTCTGAACGTTAGTCGCGATGAGTATGCCTACAAACAGCTCCTCAAGGATCTA 99 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 921 AAGGATCTTCTGAACGTTAGTCGCGATGAGTATGCCTACAAACAGCTCCTCAAGGATCTA 980 Query: 98 ATTGTTCAGGTTGGTACTTAAAACAAATCCCTGATGCATTCAAATAAATATTTGATATTT 39 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 981 ATTGTTCAGGTTGGTACTTAAAACAAATCCCTGATGCATTCAAATAAATATTTGATATTT 1040 Query: 38 GGAACNNNNNNNNGTATATCCTACTGGAGATTATGTAA 1 ||||| ||||||||||||||||||||||||| Sbjct: 1041 GGAACTTTTTTTTGTATATCCTACTGGAGATTATGTAA 1078 >At1g64200 68414.t06659 vacuolar ATP synthase subunit E, putative / V-ATPase E subunit, putative / vacuolar proton pump E subunit, putative similar to SP|Q39258 Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump E subunit) {Arabidopsis thaliana}; contains Pfam profile PF01991: ATP synthase (E/31 kDa) subunit Length = 1466 Minus Strand HSPs: Score = 448 (73.3 bits), Expect = 1.1e-14, P = 1.1e-14 Identities = 326/542 (60%), Positives = 326/542 (60%), Strand = Minus / Plus
Border_2 (88248_LBU)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTWCMCTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTCAATTTGTCCGCAATG
GGTTAATTTGTCCGCAATTTGTTTCTCATCATTACTTTACATTTAAATTTTTATAAAAGAACATTATCAGTGTTTAGATCCGGTTTGATAGTGTATTTTG
AACATGTAATAGCTCTGGAGGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCGTGTGCGAGAACACACTTGATGCGCGTCTTGATGTGGCATTCCGTATG
AAACTCCCAGTGGTATGAAAAACAAATTCTCTACCGCATAGATTACTTGTTATGATCCATCACTCACTGTCTAGGTTTACTTTTTTACTTTGGTTCTCTG
ATTCACTCATTGTTGTTAACAGATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGATGAAAGAAAGGAAAAGAGAAAAGAGATTATTCAAACCGGTTG
CGTTTGGTTATTTACCTATTTTGGGAGAGATTTCTCTTTGTTGTGATTCTTTGTATTTTGCAAAATCTTACTTTGGTGCCAAACCCATCGAACGCTTCTT
TTTTTCGAATTCCTTTTTTTCATTCCTCCTCGAATGTGTGTTATCATGGCTATACAAATAAATAAAATGAAAGACTTCTT
| Start of BLAST Alignment: | NT 1267 / Intron 4 of 5 |
| First 15 bp Perfect Match: | NT 1267 / Intron 4 of 5 |
BLAST Details: Query Sequence: 88248_LBU Length: (780 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g11150 68417.t01717 vacuolar ATP synthase subunit E / ... 2634 1.5e-114 1 At1g64200 68414.t06659 vacuolar ATP synthase subunit E, p... 370 5.1e-09 1 At3g08560 68416.t00890 vacuolar ATP synthase subunit E, p... 245 0.0089 1 At1g63820 68414.t06616 hypothetical protein 205 0.48 1 >At4g11150 68417.t01717 vacuolar ATP synthase subunit E / V-ATPase E subunit / vacuolar proton pump E subunit (VATE) identical to SP|Q39258 Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump E subunit) {Arabidopsis thaliana} Length = 1970 Plus Strand HSPs: Score = 2634 (401.3 bits), Expect = 1.5e-114, P = 1.5e-114 Identities = 538/562 (95%), Positives = 538/562 (95%), Strand = Plus / Plus Query: 220 TGTTTCTCATCATTACTTTACATTTAAATTTTTATAAAAGAACATTATCAGTGTTTAGAT 279 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1397 TGTTTCTCATCATTACTTTACATTTAAATTTTTATAAAAGAACATTATCAGTGTTTAGAT 1456 Query: 280 CCGGTTTGATAGTGTATTTTGAACATGTAATAGCTCTGGAGGTGTTGTGTTAGCTTCTCG 339 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1457 CCGGTTTGATAGTGTATTTTGAACATGTAATAGCTCTGGAGGTGTTGTGTTAGCTTCTCG 1516 Query: 340 TGATGGGAAAATCGTGTGCGAGAACACACTTGATGCGCGTCTTGATGTGGCATTCCGTAT 399 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1517 TGATGGGAAAATCGTGTGCGAGAACACACTTGATGCGCGTCTTGATGTGGCATTCCGTAT 1576 Query: 400 GAAACTCCCAGTGGTATGAAAAACAAATTCTCTACCGCATAGATTACTTGTTATGATCCA 459 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1577 GAAACTCCCAGTGGTATGAAAAACAAATTCTCTACCGCATAGATTACTTGTTATGATCCA 1636 Query: 460 TCACTCACTGTCTAGGTTTACTTTTTTACTTTGGTTCTCTGATTCACTCATTGTTGTTAA 519 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1637 TCACTCACTGTCTAGGTTTACTTTTTTACTTTGGTTCTCTGATTCACTCATTGTTGTTAA 1696 Query: 520 CAGATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGATGAAAGAAAGGAAAAGAGAAA 579 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1697 CAGATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGATGAAAGAAAGGAAAAGAGAAA 1756 Query: 580 AGAGATTATTCAAACCGGTT-GCGTTTGGTTATTTACCTATTTTGGGAGAGATTTCTCTT 638 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1757 AGAGATTATTCAAACCGGTTTGCGTTTGGTTATTTACCTATTTTGGGAGAGATTTCTCTT 1816 Query: 639 TGTTGTGATTCTTTGTATTTTGCAAAATCTTACTTTGGTGCCAAACCCATCGAACGCTTN 698 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1817 TGTTGTGATTCTTTGTATTTTGCAAAATCTTACTTTGGTGCCAAACCCATCGAACGCTTC 1876 Query: 699 NNNNNNNNNNNNNNNNNNNNNNCATTCCTCCTCGAATGTGTGTTATCATGGCTATACAAA 758 |||||||||||||||||||||||||||||||||||||| Sbjct: 1877 TTTTTTTCGAATTCCTTTTTTTCATTCCTCCTCGAATGTGTGTTATCATGGCTATACAAA 1936 Query: 759 TAAATAAAATGAAAGACTTCTT 780 |||||||||||||||||||||| Sbjct: 1937 TAAATAAAATGAAAGACTTCTT 1958 >At1g64200 68414.t06659 vacuolar ATP synthase subunit E, putative / V-ATPase E subunit, putative / vacuolar proton pump E subunit, putative similar to SP|Q39258 Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump E subunit) {Arabidopsis thaliana}; contains Pfam profile PF01991: ATP synthase (E/31 kDa) subunit Length = 1466 Plus Strand HSPs: Score = 370 (61.6 bits), Expect = 5.1e-09, P = 5.1e-09 Identities = 144/212 (67%), Positives = 144/212 (67%), Strand = Plus / Plus