At5g12130 SYNGENTA 9021
Genomic Sequence (from TAIR)
ttgtcgagaaaactctatattcttaagtctctcacatatgaacaacatatggtttcaaagacttttggacaaaccatgacttcatgatgtgtttttttaa ttaatgagtcatctcgccaatatgcaagtcatactattaatggttgtatcaaaagtcaacccgataacgaaagatctaaaactcattgaagactaatgat atgtttaattagaaccaaactcaatctaaaactgtaccatagtattaattaaaaatctaaaaaaccggaaaactcaaaaccgaaatcaatgaaccagcca aaaggaggggtatcatcgtctaatatctgaaacgacaacgttttgagtggtcttcgccgattgatatagttggggtcactcggagtctgtttttggattt gacacaaaacgcaATGAGCTTAGCTTCAGTTATCCACCACGGAATTCTCCCTCCGGCCAAATCGGATCGAATCTTTCTTACCATTCCGGTGTTCCCGCCG GATTTCAGAGCTCGTGGATGGACTAAGTCTCCTTTCTCTCTCCTTATAAATCCCTCTCTTGCTTCAGgtcctccttctctctttctttacattttctata ttccttatctgtgtgaatggaagaaggattcatctatctgagtcatgctaatgtgcttctgggttacgattctttcagCTGCCAATCGTCGTCTCTCTCA TCTTCCTCCTATCGCGTGTTCCAGAGGTATTGATCAGGAAGATGAAGgtgaatgcttcttctccaatattttcttctgtttttttttttcctgaattgtc tgtgtcagtcttacttttgctagcaagacacaattgtatataaaggaagaagctttatcttgtgacaataatttgtttatggcatgttagtacagAGAAG GAGAGCAGAGAACTTCTACCACACAAAAACGATGAGAATGCAACCACTTCACGCTCTTCTTCATCAGTAGATAGTGGAGGCCTGAAAGATTATCAACAAG AAGAAACTTACAAAACTTCCTTCAAGACTGTTGCCTTGTGTgttagtattctcttgcatctactaagtgataatgcgtttttgatctatgtgcgagacct gatttcatagttatctcaatagGTTGGCACTGCGGTGGCATTTGGAATTGGAATAGGTTTGAAGGAAGGTGTTGGCAAGGCTTCAGAGTTTTTCGCAGGg tgtgtagagcttactatatatgatatattgattttcacttaactcttcaaggagatatttcctatcttaactgttttcaactcttgcagCTACATATTGG AGCAAAGCTTGTCAGTGGACAACTTGTTTGTTTTTGTTCTTGTTTTCAAGTATTTCAAAGTGCCACTCATGTATCAGgtaccaaaactatcttcacagag ccacagagatttagctcttgactacagagtattctgattctgtgtccctttctatagAATAAGGTACTTACCTACGGTATAGCTGGTGCAATTGTTTTCC GTTTCACGCTCATTTTACTAGGAACAGCTACTCTTCAGgtgatttctatgtttacatca◄aaatatt◄tgttagtgattatttgtttcatttttctgcct catttacttttgaattctctctactttctttcagAAATTTGAAGCAGTCAACCTACTGCTTGCTGCTGTACTCTTATATTCGTCATTCAAGgtgcatact acctcatcttagcatttatacctataatcacacacaattattgatatggtattagtttttctgtcctcaatgtgttaatacagTTATTTGCAAGTGAAGA AGATGATACAGATCTATCGGACAACTTCATTGTAAAGACATGCCAGAGATTTATTCCTGTCACATgtaatatacccggtctttttctcctttttactgtt tggtatgcttccatagctgatttattcctcttttcttttgtttataactgcttgcagCAAGTTACGATGGAAATCGATTTTTCACAAAGCATGATGGCAT TTTGAAAgtaagtatatgacaaaattcctcctatatattcaaggtttatgtataagtcactgttaagttttattgcatgtggactccatgatcaaaacat tcatgatagtacctttgattacttctaattatttcaacaatattttgggcagGCCACACCATTGCTACTTACAGTAGCAGTGATCGAGCTCAGTGACATA GCATTTGCGgtaacttccgtcaccactttgtgaatctgtttttgtctctttagaaatgaagcaaatcactgatactggttgcccattttcttagGTTGAC TCAATACCAGCTGTTTTTGGCGTCACAAGGGATCCTTTTATTGTCTTGACTTCTAATCTCTTTGCAATCCTAGgtattttttccctaaacacaatttttg ttaacttcttgcctgtctcttttgaatactcttggaactttgaattgaagagtttatttatttcatctggtgtttgaatttgccgcagGACTAAGGTCTC TCTATACACTGATTTCTGAAGGAATGGACGAGCTGGAATACTTGCAGgtacctttaccacttctttaaatcttcattcatattctgtttcattacttcat actcgagctaagcatcagatacatacttaagagtgccagtaatgctcattatgtacccatggactagtatgatttgtatctaatcttgtctttgcctttc ccagCCATCAATAGCAGTTGTTCTTGGCTTCATAGGAGTCAAGATGATCCTTGATTTCTTTGgtatagatattctctcttcatcggcaatttctgcttga actaaaccatatatctacaagaaaaactaagctctctcaacatttcttcctctttctagGCTTCCACATATCAACAGAGGCATCACTTGGTGTCGTTGCA CTTTCTCTCAGTACCGGAGTACTGTTGAGCCTAACAAACAAATCCAGCGACAGCTAActaagaactgagagctgactactgagaaacagaatccagatgt atccaaccacacagttcataagaataatatcgcattgttcatcaaagcatttcgctgatgtgttactgtagataaaacacacagaaagggcattctttcc aagactcgtattctactttttgttttgtcgttaaaaaagcagcaaagaacaagacactttaaatctatttgtctggaagacatgtggttgagccccatga ttgctttgagacgagtagaactgtctttgatcgtcaagtcatcccatgtgccgcttggtgctcatcttataagattattcctttggactattagtcttcc catttgtctaaaagcacaactcttctttaggtattacaagatcaaacaaatcagactttgaatactcagacactctctaaagttggtgtttggcttatca aattatggtggtactcatggtggaagggtgcggaagacaacactctcagcctaaatattgagtaaaaagagaccagttggatgcaggaagcctactagc
Border_1 (9021_LBD)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAMTTCAATTCGGCGTTAWTTYARKWCATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
TGATGATGGGATAGAGATACTCATCACCTTTCAATATATTGATGATGTTGTCGGGTTTTGAAATGATATCAGTCAGATGATTTTGAAATGGGATAGAGAT
ACTGTTATCAAGCGTCAATTAGACAACTCATCACCTTTCAACGACACAGACCGATATCATTTCAAAACCCGACAATGATCCAAATTTACCTAAGTTTACA
TNTTGAATCAATTTTCTGATACTATGAGATATACCTGAACTACCAAGGTGAACATCTGATGTAAACATAGAAATCACCTGAAGAGTAGCTGTTCCTAGTA
AAATGAGCGTGAAACGGAAAACAATTGCACCAGCTATACCGTAGGTAAGTACCTTATTCTATAGAAAGGGCACAGAATCAGAATACTCTGTAGTCAAGAG
CTAAATCTNTGTGGCTCTGTGAAGATAGTTTTGGTCCTGATCATGAGTGGCACTTTGAAATACTTGGAAACCAGGAACCAAAACCAACCAGNTGTNCACT
GGCAAGCTTTGGTTCCAATTTGTAGCTTGCCAGAAGTTGNAAACCGGTTAAAATAGGNAAAATTNTTCNTTGAAGAGGTTAAGGGGAAAATCAATTTTTT
CTTNTTTTGGGNAGGGTTTTTCCCCNCCCTGGGGAAAAAATNTTGGAAGCCNTTGCCAAAACCTTTCTTTTNAAACTTTTTTCCAATTTCCAAAGGCCNC
CCGGAGGGGCCAANCTTTTTTGG
Start of BLAST Alignment: | NT 1153 / Intron 6 of 13 |
First 15 bp Perfect Match: | NT 1146 / Intron 6 of 13 |
BLAST Details: Query Sequence: 9021_LBD Length: (923 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g12130 68418.t01298 integral membrane TerC family prot... 1369 1.1e-56 1 At2g18740 68415.t02069 small nuclear ribonucleoprotein E,... 243 0.016 1 At5g12140 68418.t01299 cysteine protease inhibitor, putat... 212 0.33 1 At5g59150 68418.t06866 Ras-related GTP-binding protein, p... 205 0.63 1 >At5g12130 68418.t01298 integral membrane TerC family protein contains Pfam profile PF03741: Integral membrane protein TerC family Length = 2887 Minus Strand HSPs: Score = 1369 (211.5 bits), Expect = 1.1e-56, P = 1.1e-56 Identities = 321/363 (88%), Positives = 321/363 (88%), Strand = Minus / Plus Query: 809 CAAAANAAGAAAAAATTGATTTTCCCCTTAACCTCTTCAANGAANAATTTTNCCTATTTT 750 | | | | || | | ||||||||| | ||||| ||||||| || | | || ||||| || Sbjct: 817 CTATATATGATATA-TTGATTTTCAC-TTAAC-TCTTCAAGGA-GA-TATTTCCTATCTT 871 Query: 749 AACCGGTTTNCAACTTCTGGCAAGCTACAAATTGGAACCAAAGCTTGCCAGTGNACANCT 690 ||| | ||| ||||| || ||| |||||| |||||| | |||||||| ||||| ||| || Sbjct: 872 AACTG-TTTTCAACT-CTTGCA-GCTACATATTGGAGC-AAAGCTTGTCAGTGGACAACT 927 Query: 689 GGTTGGTTTTGGTTCCTGGTTTCCAAGTATTTCAAAGTGCCACTCATG-ATCAGG-ACCA 632 ||| ||||| |||| || |||| |||||||||||||||||||||||| |||||| |||| Sbjct: 928 TGTTTGTTTTTGTTCTTGTTTTC-AAGTATTTCAAAGTGCCACTCATGTATCAGGTACCA 986 Query: 631 AAACTATCTTCACAGAGCCACANAGATTTAGCTCTTGACTACAGAGTATTCTGATTCTGT 572 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 987 AAACTATCTTCACAGAGCCACAGAGATTTAGCTCTTGACTACAGAGTATTCTGATTCTGT 1046 Query: 571 G-CCCTTTCTATAGAATAAGGTACTTACCTACGGTATAGCTGGTGCAATTGTTTTCCGTT 513 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1047 GTCCCTTTCTATAGAATAAGGTACTTACCTACGGTATAGCTGGTGCAATTGTTTTCCGTT 1106 Query: 512 TCACGCTCATTTTACTAGGAACAGCTACTCTTCAGGTGATTTCTATGTTTACATCAGA-T 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct: 1107 TCACGCTCATTTTACTAGGAACAGCTACTCTTCAGGTGATTTCTATGTTTACATCAAAAT 1166 Query: 453 GTT 451 || Sbjct: 1167 ATT 1169 >At2g18740 68415.t02069 small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative similar to SWISS-PROT:P08578 small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE) [Chicken] Length = 1784 Minus Strand HSPs: Score = 243 (42.5 bits), Expect = 0.016, P = 0.016 Identities = 193/334 (57%), Positives = 193/334 (57%), Strand = Minus / Plus