OSU  Syngenta  VBI
PDF  Help   

At5g12130 SYNGENTA 9021

Genomic Sequence (from TAIR)
ttgtcgagaaaactctatattcttaagtctctcacatatgaacaacatatggtttcaaagacttttggacaaaccatgacttcatgatgtgtttttttaa
ttaatgagtcatctcgccaatatgcaagtcatactattaatggttgtatcaaaagtcaacccgataacgaaagatctaaaactcattgaagactaatgat
atgtttaattagaaccaaactcaatctaaaactgtaccatagtattaattaaaaatctaaaaaaccggaaaactcaaaaccgaaatcaatgaaccagcca
aaaggaggggtatcatcgtctaatatctgaaacgacaacgttttgagtggtcttcgccgattgatatagttggggtcactcggagtctgtttttggattt
gacacaaaacgcaATGAGCTTAGCTTCAGTTATCCACCACGGAATTCTCCCTCCGGCCAAATCGGATCGAATCTTTCTTACCATTCCGGTGTTCCCGCCG
GATTTCAGAGCTCGTGGATGGACTAAGTCTCCTTTCTCTCTCCTTATAAATCCCTCTCTTGCTTCAGgtcctccttctctctttctttacattttctata
ttccttatctgtgtgaatggaagaaggattcatctatctgagtcatgctaatgtgcttctgggttacgattctttcagCTGCCAATCGTCGTCTCTCTCA
TCTTCCTCCTATCGCGTGTTCCAGAGGTATTGATCAGGAAGATGAAGgtgaatgcttcttctccaatattttcttctgtttttttttttcctgaattgtc
tgtgtcagtcttacttttgctagcaagacacaattgtatataaaggaagaagctttatcttgtgacaataatttgtttatggcatgttagtacagAGAAG
GAGAGCAGAGAACTTCTACCACACAAAAACGATGAGAATGCAACCACTTCACGCTCTTCTTCATCAGTAGATAGTGGAGGCCTGAAAGATTATCAACAAG
AAGAAACTTACAAAACTTCCTTCAAGACTGTTGCCTTGTGTgttagtattctcttgcatctactaagtgataatgcgtttttgatctatgtgcgagacct
gatttcatagttatctcaatagGTTGGCACTGCGGTGGCATTTGGAATTGGAATAGGTTTGAAGGAAGGTGTTGGCAAGGCTTCAGAGTTTTTCGCAGGg
tgtgtagagcttactatatatgatatattgattttcacttaactcttcaaggagatatttcctatcttaactgttttcaactcttgcagCTACATATTGG
AGCAAAGCTTGTCAGTGGACAACTTGTTTGTTTTTGTTCTTGTTTTCAAGTATTTCAAAGTGCCACTCATGTATCAGgtaccaaaactatcttcacagag
ccacagagatttagctcttgactacagagtattctgattctgtgtccctttctatagAATAAGGTACTTACCTACGGTATAGCTGGTGCAATTGTTTTCC
GTTTCACGCTCATTTTACTAGGAACAGCTACTCTTCAGgtgatttctatgtttacatcaaaatatttgttagtgattatttgtttcatttttctgcct
catttacttttgaattctctctactttctttcagAAATTTGAAGCAGTCAACCTACTGCTTGCTGCTGTACTCTTATATTCGTCATTCAAGgtgcatact
acctcatcttagcatttatacctataatcacacacaattattgatatggtattagtttttctgtcctcaatgtgttaatacagTTATTTGCAAGTGAAGA
AGATGATACAGATCTATCGGACAACTTCATTGTAAAGACATGCCAGAGATTTATTCCTGTCACATgtaatatacccggtctttttctcctttttactgtt
tggtatgcttccatagctgatttattcctcttttcttttgtttataactgcttgcagCAAGTTACGATGGAAATCGATTTTTCACAAAGCATGATGGCAT
TTTGAAAgtaagtatatgacaaaattcctcctatatattcaaggtttatgtataagtcactgttaagttttattgcatgtggactccatgatcaaaacat
tcatgatagtacctttgattacttctaattatttcaacaatattttgggcagGCCACACCATTGCTACTTACAGTAGCAGTGATCGAGCTCAGTGACATA
GCATTTGCGgtaacttccgtcaccactttgtgaatctgtttttgtctctttagaaatgaagcaaatcactgatactggttgcccattttcttagGTTGAC
TCAATACCAGCTGTTTTTGGCGTCACAAGGGATCCTTTTATTGTCTTGACTTCTAATCTCTTTGCAATCCTAGgtattttttccctaaacacaatttttg
ttaacttcttgcctgtctcttttgaatactcttggaactttgaattgaagagtttatttatttcatctggtgtttgaatttgccgcagGACTAAGGTCTC
TCTATACACTGATTTCTGAAGGAATGGACGAGCTGGAATACTTGCAGgtacctttaccacttctttaaatcttcattcatattctgtttcattacttcat
actcgagctaagcatcagatacatacttaagagtgccagtaatgctcattatgtacccatggactagtatgatttgtatctaatcttgtctttgcctttc
ccagCCATCAATAGCAGTTGTTCTTGGCTTCATAGGAGTCAAGATGATCCTTGATTTCTTTGgtatagatattctctcttcatcggcaatttctgcttga
actaaaccatatatctacaagaaaaactaagctctctcaacatttcttcctctttctagGCTTCCACATATCAACAGAGGCATCACTTGGTGTCGTTGCA
CTTTCTCTCAGTACCGGAGTACTGTTGAGCCTAACAAACAAATCCAGCGACAGCTAActaagaactgagagctgactactgagaaacagaatccagatgt
atccaaccacacagttcataagaataatatcgcattgttcatcaaagcatttcgctgatgtgttactgtagataaaacacacagaaagggcattctttcc
aagactcgtattctactttttgttttgtcgttaaaaaagcagcaaagaacaagacactttaaatctatttgtctggaagacatgtggttgagccccatga
ttgctttgagacgagtagaactgtctttgatcgtcaagtcatcccatgtgccgcttggtgctcatcttataagattattcctttggactattagtcttcc
catttgtctaaaagcacaactcttctttaggtattacaagatcaaacaaatcagactttgaatactcagacactctctaaagttggtgtttggcttatca
aattatggtggtactcatggtggaagggtgcggaagacaacactctcagcctaaatattgagtaaaaagagaccagttggatgcaggaagcctactagc

Border_1 (9021_LBD)

GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAMTTCAATTCGGCGTTAWTTYARKWCATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
TGATGATGGGATAGAGATACTCATCACCTTTCAATATATTGATGATGTTGTCGGGTTTTGAAATGATATCAGTCAGATGATTTTGAAATGGGATAGAGAT
ACTGTTATCAAGCGTCAATTAGACAACTCATCACCTTTCAACGACACAGACCGATATCATTTCAAAACCCGACAATGATCCAAATTTACCTAAGTTTACA
TNTTGAATCAATTTTCTGATACTATGAGATATACCTGAACTACCAAGGTGAACATCTGATGTAAACATAGAAATCACCTGAAGAGTAGCTGTTCCTAGTA
AAATGAGCGTGAAACGGAAAACAATTGCACCAGCTATACCGTAGGTAAGTACCTTATTCTATAGAAAGGGCACAGAATCAGAATACTCTGTAGTCAAGAG
CTAAATCTNTGTGGCTCTGTGAAGATAGTTTTGGTCCTGATCATGAGTGGCACTTTGAAATACTTGGAAACCAGGAACCAAAACCAACCAGNTGTNCACT
GGCAAGCTTTGGTTCCAATTTGTAGCTTGCCAGAAGTTGNAAACCGGTTAAAATAGGNAAAATTNTTCNTTGAAGAGGTTAAGGGGAAAATCAATTTTTT
CTTNTTTTGGGNAGGGTTTTTCCCCNCCCTGGGGAAAAAATNTTGGAAGCCNTTGCCAAAACCTTTCTTTTNAAACTTTTTTCCAATTTCCAAAGGCCNC
CCGGAGGGGCCAANCTTTTTTGG

Start of BLAST Alignment:NT 1153 / Intron 6 of 13
First 15 bp Perfect Match:NT 1146 / Intron 6 of 13
BLAST Details:
Query Sequence: 9021_LBD 
Length: (923 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At5g12130 68418.t01298 integral membrane TerC family prot...  1369  1.1e-56   1
At2g18740 68415.t02069 small nuclear ribonucleoprotein E,...   243  0.016     1
At5g12140 68418.t01299 cysteine protease inhibitor, putat...   212  0.33      1
At5g59150 68418.t06866 Ras-related GTP-binding protein, p...   205  0.63      1


>At5g12130 68418.t01298 integral membrane TerC family protein contains Pfam
           profile PF03741: Integral membrane protein TerC family
        Length = 2887

  Minus Strand HSPs:

 Score = 1369 (211.5 bits), Expect = 1.1e-56, P = 1.1e-56
 Identities = 321/363 (88%), Positives = 321/363 (88%), Strand = Minus / Plus

Query:   809 CAAAANAAGAAAAAATTGATTTTCCCCTTAACCTCTTCAANGAANAATTTTNCCTATTTT 750
             | | | | || | | ||||||||| | ||||| ||||||| ||  | | || ||||| ||
Sbjct:   817 CTATATATGATATA-TTGATTTTCAC-TTAAC-TCTTCAAGGA-GA-TATTTCCTATCTT 871

Query:   749 AACCGGTTTNCAACTTCTGGCAAGCTACAAATTGGAACCAAAGCTTGCCAGTGNACANCT 690
             ||| | ||| ||||| || ||| |||||| |||||| | |||||||| ||||| ||| ||
Sbjct:   872 AACTG-TTTTCAACT-CTTGCA-GCTACATATTGGAGC-AAAGCTTGTCAGTGGACAACT 927

Query:   689 GGTTGGTTTTGGTTCCTGGTTTCCAAGTATTTCAAAGTGCCACTCATG-ATCAGG-ACCA 632
              ||| ||||| |||| || |||| |||||||||||||||||||||||| |||||| ||||
Sbjct:   928 TGTTTGTTTTTGTTCTTGTTTTC-AAGTATTTCAAAGTGCCACTCATGTATCAGGTACCA 986

Query:   631 AAACTATCTTCACAGAGCCACANAGATTTAGCTCTTGACTACAGAGTATTCTGATTCTGT 572
             |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct:   987 AAACTATCTTCACAGAGCCACAGAGATTTAGCTCTTGACTACAGAGTATTCTGATTCTGT 1046

Query:   571 G-CCCTTTCTATAGAATAAGGTACTTACCTACGGTATAGCTGGTGCAATTGTTTTCCGTT 513
             | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1047 GTCCCTTTCTATAGAATAAGGTACTTACCTACGGTATAGCTGGTGCAATTGTTTTCCGTT 1106

Query:   512 TCACGCTCATTTTACTAGGAACAGCTACTCTTCAGGTGATTTCTATGTTTACATCAGA-T 454
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct:  1107 TCACGCTCATTTTACTAGGAACAGCTACTCTTCAGGTGATTTCTATGTTTACATCAAAAT 1166

Query:   453 GTT 451
              ||
Sbjct:  1167 ATT 1169


>At2g18740 68415.t02069 small nuclear ribonucleoprotein E, putative / snRNP-E,
           putative / Sm protein E, putative similar to SWISS-PROT:P08578 small
           nuclear ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
           [Chicken]
        Length = 1784

  Minus Strand HSPs:

 Score = 243 (42.5 bits), Expect = 0.016, P = 0.016
 Identities = 193/334 (57%), Positives = 193/334 (57%), Strand = Minus / Plus