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At3g48930 SYNGENTA 9106

Genomic Sequence (from TAIR)

gttttcttcttcaatctcatggtccaagtaaaaatacaccaataccaaaatattgttacatttaagtttagtaaaaacaattaagaaaaataaccaaaat
tttgcactatttaagattagatttttaatatatatttaaataatattattgttccaaaaacaaaaagtaaaacaaaacacacccttaccaaaattatgtc
aagtcaaagcatcctcgttttagggattttctatacttgggcctaaatactaaggcccgtaattaaaggcccaataacgtttgtggtattgtacaatttt
catgtagaaaatgtcttatataaagaggtcttgcaaattagggttttcatttcagtaatcgctgccgcactatcgtctcctacctcctttgcctacaagc
tttcacgcgggagctcaacatcagccATGGCGGAACAGgttactcgatctgttctctcctctaagcttatcctcgttttatgatctattgatccttattc
actcaaatgattctaatactcttctcttttctctgtcactaattttcagACTGAGAAAGCTTTTCTTAAGCAGCCTAAGGTCTTCCTTAGgtaattttgc
gattcgatttctctctgttctctattgtttcattgtatttaagttccaagttgtttatattgttcattgtttctgatttatcaagCTCGAAGAAATCTGG
AAAGGGAAAGAGACCTGGAAAAGGTGGAAACCGTTTCTGGAAGAACATTGGTTTGGGCTTCAAGACTCCTCGTGAAGCCATTGATGgtatgtttaagctt
ttaactcgttataatagataaggaactcttggattgtgttgttcatatagtcgatagatttcaaatgctattttgtcttgtagaatcttaagctttggtt
tagtgagttctgattcttcagctttatctggatctacattactgtttcagtgatgcaaatgttatcagtagattttgaattagtaggatgtcactgattt
gaatatgtgatcaagcttcatagaaacctgcatcattctctatatacctttaagtcagattctcaggttattgtgtatttgtgtggaacagGAGCTTACG
TTGACAAGAAATGCCCCTTCACTGGAACTGTTTCCATTAGAGGTCGTATCTTAGCTGGTACTTGCCACAGTGCGAAAATGCAGAGGAC►CAT►TATCGTG
CGAAGGGATTACCTTCACTTTGTGAAGAAGTATCAGAGgtaaattcatacattctcatacttctttccatagagtcttacacattgatgtttaagaaagt
aatatcctttttgttcttagGTATGAGAAGAGGCATTCAAACATTCCGGCTCATGTCTCACCATGCTTCCGTGTTAAGGAAGGAGACCATATCATCATTG
GCCAATGCAGgttatgatctgattcaaacctacaaattgtctccattgattctgattatcgtgaatttgttttgatctttttgtttgttaatgattgata
atttcagGCCATTGTCGAAGACAGTGAGGTTCAATGTGTTGAAGGTGATACCAGCTGGGTCTTCTTCTTCATTTGGAAAGAAGGCATTCACTGGAATGTA
Agctgctgctgttgatgatgttagtttatgtttctggatagagctgaactattatgttttatggtgattttcttattgaatttttccagacattaaattt
tgttttactctgctgaatctttttcatcccaatctgtgcctctgtttaagatctgatttttgctactcttctcttaccttgtcctataattaggtttaaa
acccggttagacaggccagtccaatctagtactgtcgagtttggtctaattgatgttcttagtcgaattatcaaataagaaaacgcgaaggattttgaca
acaaaataaaacgtaaaaggaatgtttataactttatatagtgaagaaattacagatttgttgggcatacaaagtatttgtttatgtactcttttttatc
cccgtctacttaaattaaaccctaaactatatttacttggacctctctccgaacatTTACATTGGTCGTAGCTCGTTGATGAGACCATCGAACAAAAAGT
TG

Border_1 (9106_LBU)


GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATCG
TGCGAAGGGATTACCTTCACTTTGTGAAGAAGTATCAGAGGTAAATTCATACATTCTCATACTTCTTTCCATAGAGTCTTACACATTGATGTTTAAGAAA
GTAATATCCTTTTTGTTCTTAGGTATGAGAAGAGGCATTCAAACATTCCGGCTCATGTCTCACCATGCTTCCGTGTTAAGGAAGGAGACCATATCATCAT
TGGCCAATGCAGGTTATGATCTGATTCAAACCTACAAATTGTCTCCATTGATTCTGATTATCGTGAATTTGTTTTGATCTTTTTGTTTGTTAATGATTGA
TAATTTCAGGCCATTGTCGAAGACAGTGAGGTTCAATGTGTTGAAGGTGATACCAGCTGGGTCTTCTTCTTCATTTGGAAAGAAGGCATTCACTGGAATG
TAAGCTGCTGCTGKTGATGATGTTAGTTTATGTTTCTGGATAGAGCTGAACTATTATGKTTTATGGGGATTTTCTTATTGAATTTTTCCAGACATTAAAT
TTTGGTTTACTCTGCTGAATCTTTTTCATCCCAATCTGTGCCTCTGKTTAAAGATCTGATCTCTGCT

Start of BLAST Alignment:	NT 762 / Exon 4 of 6
First 15 bp Perfect Match:	NT 765 / Exon 4 of 6

BLAST Details:
Query Sequence: 9106_LBU 
Length: (767 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At3g48930 68416.t04963 40S ribosomal protein S11 (RPS11A)     2803  4.5e-122  1
At2g24110 68415.t02693 40S ribosomal protein S11, express...   738  1.2e-28   1
At5g23740 68418.t02525 40S ribosomal protein S11 (RPS11C)      555  1.1e-19   1
At4g30800 68417.t04047 40S ribosomal protein S11 (RPS11B)...   537  8.7e-19   1


>At3g48930 68416.t04963 40S ribosomal protein S11 (RPS11A)
        Length = 1496

  Plus Strand HSPs:

 Score = 2803 (426.6 bits), Expect = 4.5e-122, P = 4.5e-122
 Identities = 566/575 (98%), Positives = 569/575 (98%), Strand = Plus / Plus

Query:   193 CAATATCGTGCGAAGGGATTACCTTCACTTTGTGAAGAAGTATCAGAGGTAAATTCATAC 252
             || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   840 CATTATCGTGCGAAGGGATTACCTTCACTTTGTGAAGAAGTATCAGAGGTAAATTCATAC 899

Query:   253 ATTCTCATACTTCTTTCCATAGAGTCTTACACATTGATGTTTAAGAAAGTAATATCCTTT 312
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   900 ATTCTCATACTTCTTTCCATAGAGTCTTACACATTGATGTTTAAGAAAGTAATATCCTTT 959

Query:   313 TTGTTCTTAGGTATGAGAAGAGGCATTCAAACATTCCGGCTCATGTCTCACCATGCTTCC 372
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   960 TTGTTCTTAGGTATGAGAAGAGGCATTCAAACATTCCGGCTCATGTCTCACCATGCTTCC 1019

Query:   373 GTGTTAAGGAAGGAGACCATATCATCATTGGCCAATGCAGGTTATGATCTGATTCAAACC 432
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1020 GTGTTAAGGAAGGAGACCATATCATCATTGGCCAATGCAGGTTATGATCTGATTCAAACC 1079

Query:   433 TACAAATTGTCTCCATTGATTCTGATTATCGTGAATTTGTTTTGATCTTTTTGTTTGTTA 492
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1080 TACAAATTGTCTCCATTGATTCTGATTATCGTGAATTTGTTTTGATCTTTTTGTTTGTTA 1139

Query:   493 ATGATTGATAATTTCAGGCCATTGTCGAAGACAGTGAGGTTCAATGTGTTGAAGGTGATA 552
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1140 ATGATTGATAATTTCAGGCCATTGTCGAAGACAGTGAGGTTCAATGTGTTGAAGGTGATA 1199

Query:   553 CCAGCTGGGTCTTCTTCTTCATTTGGAAAGAAGGCATTCACTGGAATGTAAGCTGCTGCT 612
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1200 CCAGCTGGGTCTTCTTCTTCATTTGGAAAGAAGGCATTCACTGGAATGTAAGCTGCTGCT 1259

Query:   613 GKTGATGATGTTAGTTTATGTTTCTGGATAGAGCTGAACTATTATGKTTTATGGGGATTT 672
             |+||||||||||||||||||||||||||||||||||||||||||||+||||||| |||||
Sbjct:  1260 GTTGATGATGTTAGTTTATGTTTCTGGATAGAGCTGAACTATTATGTTTTATGGTGATTT 1319

Query:   673 TCTTATTGAATTTTTCCAGACATTAAATTTTGGTTTACTCTGCTGAATCTTTTTCATCCC 732
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct:  1320 TCTTATTGAATTTTTCCAGACATTAAATTTTGTTTTACTCTGCTGAATCTTTTTCATCCC 1379

Query:   733 AATCTGTGCCTCTGKTTAAAGATCTGATCTCTGCT 767
             ||||||||||||||+|||| |||||||| | ||||
Sbjct:  1380 AATCTGTGCCTCTGTTTAA-GATCTGATTTTTGCT 1413


>At2g24110 68415.t02693 40S ribosomal protein S11, expressed pseudogene similar
           to GB:J05216; blastp match of 76% identity and 8.9e-54 P-value to
           GP|24417185|dbj|BAC22544.1||AP003932 putative ribosomal protein S11
           {Oryza sativa (japonica cultivar-group)}
        Length = 1018

  Plus Strand HSPs:

 Score = 738 (116.8 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 295/437 (67%), Positives = 296/437 (67%), Strand = Plus / Plus