At1g01040 SYNGENTA 9156
Genomic Sequence (from TAIR)
tacaaaacagaagcaagcaagtggaaaacagaccagaagagagaggaagacgaagagagaaacagaacagagtagggatcgatagaccgtggaatctcag aatcacaaacactttgcaaaagggttttcaattcctatttatttacaaagaaatcatcaatagtagtggtctctagggttttgcttgctcttcttcgtga cccctttttacctgcaaacaacaacttcaaaattggcgtgtttcgtacggtctatctaaccctaatctgtcacaaaacactcttcttctctcaccccttt ttctgggtttattcaattctcgtgcttttggttctgttttcttctctggggatttggttttcttgagtgagtttttctcctctttcttatgttcttgatt tgattattatatagaattATGGTAATGGAGGATGAGCCTAGAGAAGCCACAATAAAGCCTTCTTATTGGCTAGATGCTTGCGAGGACATCTCTTGTGATC TTATCGATGATCTCGTGTCTGAATTTGATCCTTCCTCTGTTGCTGTCAATGAATCCACTGATGAAAACGGCGTCATCAATGATTTTTTCGGTGGGATTGA TCACATTTTAGATAGTATCAAGAACGGTGGAGGCTTACCAAACAATGGCGTTTCTGATACCAATTCTCAAATCAACGAGGTTACTGTAACTCCTCAGGTT ATTGCTAAGGAGACAGTGAAGGAGAATGGGTTGCAAAAGAATGGCGGTAAGAGAGACGAATTCTCGAAAGAGGAAGGAGACAAGGATAGGAAGAGAGCTA GGGTTTGTAGTTATCAGAGTGAAAGGAGTAACCTTTCAGGTAGAGGGCATGTTAATAATTCTAGGGAGGGAGATAGGTTTATGAATAGGAAACGTACTCG TAATTGGGACGAGGCGGGTAACAATAAGAAGAAAAGGGAATGTAACAATTACAGAAGAGATGGTAGAGATAGAGAAGTTAGGGGTTATTGGGAGAGGGAT AAAGTTGGTTCCAATGAGTTGGTTTATAGGTCAGGGACTTGGGAAGCTGATCATGAAAGAGATGTTAAGAAAGTGAGTGGTGGAAACCGCGAATGCGATG TCAAGGCAGAGGAGAACAAGAGTAAGCCTGAAGAACGTAAAGAGAAGGTTGTGGAAGAGCAAGCAAGGCGATACCAGTTGGATGTTCTTGAACAAGCTAA AGCGAAAAACACGATTGCTTTCCTTGAGACCGGTGCTGGAAAGACACTTATCGCGATTCTTCTTATTAAAAGTGTTCATAAGGATCTGATGAGCCAGAAC AGAAAAATGCTCTCGGTGTTCTTGGTTCCCAAAGTGCCTTTGGTTTATCAGgtaccgcctaataagaaacatgtttgtattcttttttaaaaaattggtt acctattggttttggttggttgatttatcttacgttatcagCAAGCAGAAGTGATCCGTAATCAAACTTGTTTTCAAGTTGGACATTATTGTGGTGAGAT GGGACAGGACTTTTGGGATTCTCGAAGGTGGCAACGAGAGTTTGAGTCTAAGCAGgttgctttttgatgcttctttttcataccagctttgatcttttat atgaatcagttcttgaagttaacgagtttttttctattttcttctacgcagGTTCTAGTTATGACAGCACAAATTCTGTTGAATATACTGAGACACAGTA TCATTAGAATGGAAACAATTGATCTTCTTATTCTCGACGAGTGTCACCACGCTGTCAAGAAACATCCATACTCTTTAGTGATGTCAGAGTTTTACCATAC AACTCCTAAAGATAAAAGACCTGCCATCTTTGGAATGACTGCTTCGCCTGTTAATTTAAAGGgtactgattgtttcttgtatacagttctctaagcttgc caatgttcttgaaagtgacactttttgtttgtaaacgtagGTGTTTCAAGCCAAGTAGATTGTGCGATAAAGATACGTAACCTCGAGACCAAGTTGGATT CTACGGTTTGTACTATAAAAGATCGAAAAGAATTAGAGAAACATGTGCCTATGCCTTCAGAGATAGTCGTCGAGTATGACAAAGCTGCTACTATGTGGTC TCTTCATGAGACAATAAAGCAAATGATTGCAGCTGTTGAAGAAGCGGCACAAGCAAGTTCAAGGAAAAGCAAGTGGCAATTTATGGGGGCTAGGGATGCT GGAGCAAAGGATGAATTGAGACAGGTTTATGGCGTCTCTGAAAGAACGGAGAGCGATGGTGCTGCCAATTTGATTCATAAACTTAGAGCTATCAATTATA CTCTTGCTGAATTGGGTCAATGGTGTGCTTACAAGgtaaaaaaacaacttagtaaatagttttcgataatttgaaatggatatgttattttcatatgata taatttttgtgtcttctttcaagGTGGGACAATCATTCTTGTCTGCTTTGCAAAGTGATGAGAGGGTGAATTTCCAAGTCGACGTGAAGTTTCAAGAATC ATACCTCAGTGAGGTGGTGTCACTCTTGCAATGTGAGCTTCTGGAAGGCGCTGCTGCTGAAAAAGTCGCGGCGGAAGTTGGCAAACCAGAAAATGGTAAT GCACATGACGAGATGGAGGAGGGAGAGCTCCCTGATGATCCTGgtaagtattaatcacattctttgtctaatcgctttttaccggttttagaaatccaat attaacagagctctatggttttagTGGTCTCGGGAGGGGAGCACGTTGATGAAGTAATAGGCGCCGCAGTGGCTGATGGGAAAGTTACTCCAAAAGTACA ATCATTGATCAAACTACTCCTCAAATATCAGCACACAGCTGATTTTCGAGCTATTGTTTTCGTTGAGAGGGTGGTTGCTGCTTTGGTTCTTCCTAAGgtt aggattaaagtgaaaaaaacaatttattttcttgtgtataatttttctgcctatgtctctctgagcctggaaattttcagGTTTTTGCGGAGCTGCCTTC GCTTAGTTTTATACGGTGTGCCAGCATGATTGGACACAATAACAGCCAGGAGATGAAATCATCTCAAATGCAGGATACAATTTCCAAATTCCGAGATGGG CATgtatgattttttttgtctttcattaagacatattttttttttatcttatactgaaatgtcttactatttcctctttctactgtgatagGTGACACTG TTAGTTGCCACAAGCGTTGCTGAGGAAGGACTTGATATTAGGCAATGTAACGTTGTTATGCGTTTCGACCTTGCAAAGACGGTGCTGGCATACATTCAGT CTCGTGGCCGGGCAAGAAAGCCTGGATCAGACTACATACTCATGGTTGAGAGgtacataaaaagctttaagaactacattttgatttttgtaactactgg tcaccaaatcagtactgatatgtcaacttgtgttacttgcagAGGAAATGTATCTCACGCAGCGTTCCTAAGGAATGCTAGGAACAGTGAGGAGACACTT CGAAAAGAAGCAATAGAAAGGACTGATCTTAGTCATCTCAAAGATACATCGAGATTAATCTCAATTGATGCTGTGCCTGGTACAGTTTATAAGGTGGAGG CAACTGGTGCCATGGTTAGCTTGAATTCCGCGGTTGGTCTTGTACATTTCTACTGCTCTCAGCTTCCTGGTGACAGgtaagtttgccgataatttttatt gtcctaatgacctctccttttcctgtatgagatgatggattgcttctctctcgtgtctcagGTATGCAATCCTTCGTCCTGAGTTTAGCATGGAGAAGCA TGAAAAGCCTGGGGGCCACACGGAATATTCATGTAGGCTTCAGCTTCCTTGCAATGCACCGTTTGAAATACTTGAGGGTCCTGTTTGCAGTTCAATGCGT CTTGCACAACAGgtggacataatagtttgtttgtttatcttacttgttattttctttcagtgttccatgtcttgaagtattgcgtgtttgatatgtagGC TGTATGTTTAGCTGCTTGCAAGAAACTGCATGAGATGGGTGCATTTACCGATATGCTATTACCGGACAAAGGAAGTGGTCAAGACGCTGAGAAGGCTGAC CAAGATGATGAAGGTGAGCCTGTTCCTGGAACTGCTAGACATAGAGAGTTCTATCCTGAAGGTGTGGCGGATGTACTTAAGgtaatattagcactaacct atgaaatttttgctaaatgtgcttttagaggaatgtggttttcaatatttgactgtttataccatgcacagGGAGAATGGGTTTCATCTGGAAAGGAAGT TTGTGAGAGCTCAAAGCTATTCCATTTATACATGTATAATGTCAGATGTGTAGATTTTGGCTCTTCAAAAGATCCATTCCTAAGCGAAGTTTCAGAGTTC GCGATTCTTTTTGGCAATGAGCTGGATGCAGAGgttgttgtttctctctccatggatttgagtattagaatttgaagatgtaaccatggttaactaagat ttgttttactgtatcagGTATTATCGATGTCTATGGATCTTTATGTTGCTCGGGCCATGATCACTAAAGCATCTCTTGCTTTCAAGGGATCACTTGATAT TACAGAAAACCAGgttagactgaacaacaacctctatttttcctaacatttatgtttgcttgagaaactttttatcttatattggtggcatttcttgtgc agCTATCATCTCTAAAAAAGTTTCATGTGAGGTTAATGAGTATCGTGTTGGATGTTGATGTTGAACCCTCCACGACACCATGGGATCCTGCAAAGGCCTA CCTGTTTGTCCCTGTTACTGACAATACGTCTATGGAACCCATAAAAGGGATCAACTGGGAATTGGTTGAAAAGATTACGAAAACCACAGCGTGGGACAAC CCTCTTCAGAGAGCTCGTCCCGATGTATATCTCGGGACTAATGAGAGAACTCTTGGTGGGGACAGAAGGGAATATGGGTTTGGTAAACTTCGTCACAACA TTGTATTTGGGCAGAAATCTCACCCAACTTATGGTATTAGAGGAGCTGTTGCATCCTTCGATGTTGTGAGAGCTTCTGGATTGTTACCTGTGAGAGATGC TTTTGAGAAGGAAGTAGAAGAGGATTTATCAAAAGGAAAATTGATGATGGCTGATGGGTGCATGGTTGCAGAAGATCTTATTGGGAAAATAGTGACAGCC GCACATTCCGGGAAGCGGTTTTACGTAGATTCAATTTGTTATGACATGAGTGCAGAAACATCTTTCCCTAGGAAAGAGGGATATCTTGGTCCCCTAGAGT ACAACACGTACGCTGACTATTACAAGCAAAAgtaagaaaacatcttcaaataattttttgatttcttcaatcctttttctaagtttcattagatactaat acttttctaatatcacgaggacttacatggcctcaagtcacctgtggtgttgtgcaagaaggagaagcaaagtctgtctatgtattatgagatagctact tctatggctaggatatatgttgtacaagaccggcttttcttctacttcttgcacaacctgaggttattgaggctatacaagtcttcttctataatgttat ttattagGTATGGAGTTGATTTGAACTGTAAGCAA◄CAACCTTTGATTAAAGGACGTGGTGTTTCGTATTGC►AAGAACCTTCTTTCTCCTCGGTTTGAA CAGTCAGgttataagaaattcttttcactttaacaatttaatgatataaccgataaattaacgcttctttgttttttcttgcaattcaaagGTGAATCTG AGACAGTCCTTGATAAGACATATTACGTGTTTCTTCCACCTGAACTATGCGTTGTGCATCCGCTTTCGGGTTCACTTATCCGAGGTGCTCAGAGGTTACC CTCTATAATGAGAAGAGTTGAGAGCATGTTACTCGCTGTTCAACTCAAAAATTTGATTAGTTATCCTATTCCCACATCAAAGgtatatatatatatatta tgcttagtgtcttttttttttttgttgaaactatctaatcatatttggtatatatatgtagATTCTTGAAGCCTTGACTGCCGCCTCGTGCCAGGAAACG TTCTGCTACGAGAGAGCTGAGCTTTTAGGAGATGCGTATCTAAAATGGGTTGTTAGTCGTTTTCTGTTTCTCAAGTATCCTCAAAAGCACGAGGGTCAGC TTACAAGGATGAGGCAACAAATGGTTAGTAATATGGTTCTTTATCAGTTTGCTCTGGTTAAAGGGCTTCAGTCATATATCCAGGCGGATCGATTCGCCCC GTCTAGGTGGTCTGCTCCTGGTGTGCCTCCGGTTTTCGACGAGGACACAAAAGATGGAGGATCTTCGTTTTTCGATGAAGAGCAAAAACCTGTTTCCGAG GAAAACAGCGATGTGTTTGAAGATGGGGAGATGGAGGATGGTGAACTAGAGGGTGATTTGAGTTCGTACCGAGTTTTATCTAGCAAAACGTTAGCTGATG TTGTTGAGGCTTTGATTGGTGTTTATTACGTCGAAGGGGGTAAGATTGCAGCTAATCATTTGATGAAATGGATTGGGATTCACGTGGAGGATGATCCTGA TGAAGTCGATGGAACATTGAAAAATGTTAATGTTCCAGAGAGTGTGCTCAAGAGCATCGACTTTGTTGGTCTTGAGAGAGCTCTTAAATATGAGTTTAAA GAGAAAGGTCTTCTTGTTGAAGCTATAACACATGCTTCAAGACCATCTTCAGGTGTTTCGTGTTACCAGAGATTGGAATTTGTTGGTGACGCGGTCTTGG ATCATCTCATCACAAGACATCTATTTTTCACATACACAAGCCTTCCTCCTGGTCGGTTAACAGATCTTCGAGCTGCAGCGGTTAACAACGAGAATTTTGC TCGCGTTGCGGTTAAACATAAACTCCACTTGTACCTTCGTCACGGTTCAAGCGCCCTCGAAAAACAGgtaaacaagattaagaaacaaagtatattgttc tcaaagagtttcaaatgtttgactgtttggttactttttgtttttcagATTCGGGAATTTGTGAAGGAGGTTCAAACCGAGTCATCGAAACCGGGGTTTA ACTCTTTTGGTTTGGGAGACTGCAAAGCACCAAAAGTTCTTGGAGACATTGTTGAATCTATTGCAGGTGCTATTTTTCTTGATAGTGGAAAAGATACAAC TGCTGCTTGGAAGgttagttagttagttatttcggttgaaaatctctaactaactcgtttttttttggaattgtaattcttagcttactaaatcgtatga ttcttttccagGTTTTTCAACCTTTGCTTCAGCCCATGGTGACACCAGAGACACTTCCAATGCATCCGGTGCGAGAGCTACAAGAGCGGTGCCAGCAACA AGCAGAAGGGTTAGAATACAAAGCGAGTAGGAGTGGTAACACAGCGACTGTGGAAGTTTTCATCGACGGTGTTCAAGTTGGAGTAGCGCAAAACCCGCAG AAGAAAATGGCTCAAAAGCTAGCTGCGAGGAACGCACTTGCAGCTTTGAAAGAGAAAGAAATAGCAGAATCAAAGGAGAAGCATATCAACAACGGTAATG CGGGAGAGGATCAAGGCGAGAATGAGAATGGGAACAAGAAGAATGGGCATCAGCCGTTTACGAGACAAACGTTGAATGATATTTGTTTGAGGAAGAATTG GCCAATGCCTTCTTACAGgtaacaacaatttaatagaaagtgggtaaacaaatcaattttgggctttattgagcttatttcgggtttgtggtgaattttg tagATGTGTGAAAGAAGGAGGACCGGCTCATGCAAAGAGATTTACGTTTGGGGTAAGAGTTAATACGAGCGATAGAGGATGGACCGATGAGTGTATTGGC GAGCCAATGCCGAGTGTTAAGAAAGCTAAGGATTCAGCTGCGGTTCTTCTACTTGAGCTTTTAAATAAAACTTTTTCTTGAttcttttactctcttcaac gagatgtagtcattacattttaaaccttaaaaccatagtggttgtagtgttttaattgatctgttgttattcgagtttaattggtttatagaactcttca aacaaattaaaccaaaaatttcaatgccaagaaagggtctttaaaacgaaattacagaaggaccaaatgataaggaagaaaaatgcagagataaaagtaa tatcaattaggatcatatgcttcttattatcaatgaaaagtaacagaaacatagatgctgcagaaatcttctgaggagaagctTCAACGCCTCAGGGTGT GGAGAATGTATTCAGCATAGAGGTCCctgtaatggggaattcagaatccagagttgctttaatgttacaaactaaaaaagatgtaagagagtttggttct tgataaagaaacagaggcttacATTGAGTACTGGATAGCTTCAACCGCAGACTCAGATGGCAGAAAATCATTCACTGCAACTTCCTTGTTCTCGTTTTTC TTGTctgtaagatattagagttaaagggaaaaactaatacttgttgagagatcaatagagatgaataaggaggaacactgaagaaaaaggatacAGTCTT CGAAGAAACGACGGATTTCAGAGAGACGGTGAGGAGGAAGTTCTTTGATGTCAGTGTAGTGCTTATATTCAGGATCATCAACACACACTGCAATGATCTT GT
Border_1 (9156_LB2D)
TTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATATCCTGAGGTCTAGCAGG
CTGCCAAGATAACTGAATTGCTTACAGTTCAAATCAACTCCATACCTAATAAATAACATTATAGAAGAAGACTTGTATAGCCTCAATAACCTCAGGTTGT
GCAAGAAGTAGAAGAAAAGCCGGTCTTGTACAACATATATCCTAGCCATAGAAGTAGCTATCTCATAATACATAGACAGACTTTGCTTCTCCTTCTTGCA
CAACACCACAGGTGACTTGAGGCCATGTAAGTCCTCGTGATATTAGAAAAGTATTAGTATCTAATGAAACTTAGAAAAAGGATTGAAGAAATCAAAAAAT
TATTTGAAGATGTTTTCTTACTTTTGCTTGTAATAGTCAGCGTACGTGTTGTACTCTAGGGGACCAAGATATCCCTCTTTCCTAGGGAAAGATGTTTCTG
CACTCATGTCATAACAAATTGAATCTACGTAAAACGGCTTCCCGGAATGTGCGGCTGTCACTATTTTCCCAATAAGATCTTCTGCAACCATGCACCCATC
AGCCATCATCAATTTTCCTTTTGATAAATCCTCTTCTACTTCCTTCTCAAAAGCATCTCTCACAGGTAACAATCCAG
| Start of BLAST Alignment: | NT 5217 / Exon 15 of 20 |
| First 15 bp Perfect Match: | NT 5217 / Exon 15 of 20 |
BLAST Details: Query Sequence: 9156_LB2D Length: (677 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g01040 68414.t00004 DEAD/DEAH box helicase carpel fact... 2791 1.4e-120 1 At3g18215 68416.t02063 expressed protein contains Pfam pr... 209 0.31 1 At3g31314 68416.t03650 CACTA-like transposase family (Ptt... 179 0.99994 1 >At1g01040 68414.t00004 DEAD/DEAH box helicase carpel factory / CAF identical to RNA helicase/RNAseIII CAF protein GB:AAF03534 GI:6102610 from [Arabidopsis thaliana] Length = 8019 Minus Strand HSPs: Score = 2791 (424.8 bits), Expect = 1.4e-120, P = 1.4e-120 Identities = 559/560 (99%), Positives = 559/560 (99%), Strand = Minus / Plus Query: 677 CTGGATTGTTACCTGTGAGAGATGCTTTTGAGAAGGAAGTAGAAGAGGATTTATCAAAAG 618 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5031 CTGGATTGTTACCTGTGAGAGATGCTTTTGAGAAGGAAGTAGAAGAGGATTTATCAAAAG 5090 Query: 617 GAAAATTGATGATGGCTGATGGGTGCATGGTTGCAGAAGATCTTATTGGGAAAATAGTGA 558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5091 GAAAATTGATGATGGCTGATGGGTGCATGGTTGCAGAAGATCTTATTGGGAAAATAGTGA 5150 Query: 557 CAGCCGCACATTCCGGGAAGCCGTTTTACGTAGATTCAATTTGTTATGACATGAGTGCAG 498 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 5151 CAGCCGCACATTCCGGGAAGCGGTTTTACGTAGATTCAATTTGTTATGACATGAGTGCAG 5210 Query: 497 AAACATCTTTCCCTAGGAAAGAGGGATATCTTGGTCCCCTAGAGTACAACACGTACGCTG 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5211 AAACATCTTTCCCTAGGAAAGAGGGATATCTTGGTCCCCTAGAGTACAACACGTACGCTG 5270 Query: 437 ACTATTACAAGCAAAAGTAAGAAAACATCTTCAAATAATTTTTTGATTTCTTCAATCCTT 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5271 ACTATTACAAGCAAAAGTAAGAAAACATCTTCAAATAATTTTTTGATTTCTTCAATCCTT 5330 Query: 377 TTTCTAAGTTTCATTAGATACTAATACTTTTCTAATATCACGAGGACTTACATGGCCTCA 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5331 TTTCTAAGTTTCATTAGATACTAATACTTTTCTAATATCACGAGGACTTACATGGCCTCA 5390 Query: 317 AGTCACCTGTGGTGTTGTGCAAGAAGGAGAAGCAAAGTCTGTCTATGTATTATGAGATAG 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5391 AGTCACCTGTGGTGTTGTGCAAGAAGGAGAAGCAAAGTCTGTCTATGTATTATGAGATAG 5450 Query: 257 CTACTTCTATGGCTAGGATATATGTTGTACAAGACCGGCTTTTCTTCTACTTCTTGCACA 198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5451 CTACTTCTATGGCTAGGATATATGTTGTACAAGACCGGCTTTTCTTCTACTTCTTGCACA 5510 Query: 197 ACCTGAGGTTATTGAGGCTATACAAGTCTTCTTCTATAATGTTATTTATTAGGTATGGAG 138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5511 ACCTGAGGTTATTGAGGCTATACAAGTCTTCTTCTATAATGTTATTTATTAGGTATGGAG 5570 Query: 137 TTGATTTGAACTGTAAGCAA 118 |||||||||||||||||||| Sbjct: 5571 TTGATTTGAACTGTAAGCAA 5590 >At3g18215 68416.t02063 expressed protein contains Pfam profile PF04654: Protein of unknown function, DUF599 Length = 1688 Minus Strand HSPs: Score = 209 (37.4 bits), Expect = 0.37, P = 0.31 Identities = 189/310 (60%), Positives = 189/310 (60%), Strand = Minus / Plus
Border_2 (9156_LB1U)
TTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATATCCTGTAAACAATGTGT
TAATAAGAACCTTCTTTCTCCTCGGTTTGAACAGTCAGGTTATAAGAAATTCTTTTCACTTTAACAATTTAATGATATAACCGATAAATTAACGCTTCTT
TGTTTTTTCTTGCAATTCAAAGGTGAATCTGAGACAGTCCTTGATAAGACATATTACGTGTTTCTTCCACCTGAACTATGCGTTGTGCATCCGCTTTCGG
GTTCACTTATCCGAGGTGCTCAGAGGTTACCCTCTATAATGAGAAGAGTTGAGAGCATGTTACTCGCTGTTCAACTCAAAAATTTGATTAGTTATCCTAT
TCCCACATCAAAGGTATATATATATATATTATGCTTAGTGTCTTTTTTTTTT
| Start of BLAST Alignment: | NT 5253 / Exon 15 of 20 |
| First 15 bp Perfect Match: | NT 5253 / Exon 15 of 20 |
BLAST Details: Query Sequence: 9156_LB1U Length: (452 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g01040 68414.t00004 DEAD/DEAH box helicase carpel fact... 1585 6.8e-66 1 At3g59370 68416.t06127 expressed protein hypothetical pro... 191 0.41 1 At2g19060 68415.t02111 GDSL-motif lipase/hydrolase family... 186 0.82 1 At3g29643 68416.t03400 pseudogene, similar to putative he... 174 0.998 1 >At1g01040 68414.t00004 DEAD/DEAH box helicase carpel factory / CAF identical to RNA helicase/RNAseIII CAF protein GB:AAF03534 GI:6102610 from [Arabidopsis thaliana] Length = 8019 Plus Strand HSPs: Score = 1585 (243.9 bits), Expect = 6.8e-66, P = 6.8e-66 Identities = 323/338 (95%), Positives = 323/338 (95%), Strand = Plus / Plus Query: 105 AAGAACCTTCTTTCTCCTCGGTTTGAACAGTCAGGTTATAAGAAATTCTTTTCACTTTAA 164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5627 AAGAACCTTCTTTCTCCTCGGTTTGAACAGTCAGGTTATAAGAAATTCTTTTCACTTTAA 5686 Query: 165 CAATTTAATGATATAACCGATAAATTAACGCTTCTTTGTTTTTTCTTGCAATTCAAAGGT 224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5687 CAATTTAATGATATAACCGATAAATTAACGCTTCTTTGTTTTTTCTTGCAATTCAAAGGT 5746 Query: 225 GAATCTGAGACAGTCCTTGATAAGACATATTACGTGTTTCTTCCACCTGAACTATGCGTT 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5747 GAATCTGAGACAGTCCTTGATAAGACATATTACGTGTTTCTTCCACCTGAACTATGCGTT 5806 Query: 285 GTGCATCCGCTTTCGGGTTCACTTATCCGAGGTGCTCAGAGGTTACCCTCTATAATGAGA 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5807 GTGCATCCGCTTTCGGGTTCACTTATCCGAGGTGCTCAGAGGTTACCCTCTATAATGAGA 5866 Query: 345 AGAGTTGAGAGCATGTTACTCGCTGTTCAACTCAAAAATTTGATTAGTTATCCTATTCCC 404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5867 AGAGTTGAGAGCATGTTACTCGCTGTTCAACTCAAAAATTTGATTAGTTATCCTATTCCC 5926 Query: 405 ACATCAAAGGNNNNNNNNNNNNNNNTATGCTTAGTGTC 442 |||||||||| ||||||||||||| Sbjct: 5927 ACATCAAAGGTATATATATATATATTATGCTTAGTGTC 5964 >At3g59370 68416.t06127 expressed protein hypothetical protein F12F1.4 - Arabidopsis thaliana, EMBL:AC002131 Length = 661 Minus Strand HSPs: Score = 191 (34.7 bits), Expect = 0.52, P = 0.41 Identities = 185/331 (55%), Positives = 185/331 (55%), Strand = Minus / Plus