At3g48500 SYNGENTA 94990
Genomic Sequence (from TAIR)
atcccaagttcatgtgtgttgtactttgattatgtacaatttaactacattgttagtaaggagtctatatagatgcctgtatcaaaacatctctcaatca tgtgtttattactttagcctaaacaagctttatgatctttaaccaacggtgttgatagtactggtcatgtaggggttcatccataactaaacgtctaaac cttatattaaaatgggtctaactgatcaatcaaaaacatttggggtcaaaacaatatattggataaatataagggttcatcaaaaaaaacttaacatttc ttcttcactgtaaaatgaaataaagcttatccatactcaacttcttcactctctcttaaaccttcaaaaaccctgaagagtgacgaatgaatcATGCAGA TTTGCCAAACCAAGCTCAATTTCACTTTCCCTAATCCCACAAACCCTAATTTCTGCAAACCCAAAGCTCTTCAATGGTCACCGCCTCGTCGCATATCCTT GCTGCCTTGTCGTGGATTCAGCTCCGATGAATTCCCAGTCGACGAAACCTTCCTCGAGAAATTCGGACCAAAGGACAAAGACACAGAAGATGAAGCTCGA CGACGTAACTGGATCGAACGTGGTTGGGCTCCATGGGAAGAGATTCTCACACCAGAAGCTGATTTCGCTCGTAAATCTCTCAACGAAGGTGAAGAAGTTC CGCTTCAATCGCCGGAAGCGATCGAAGCGTTTAAGATGCTGAGACCATCGTATAGGAAGAAGAAGATTAAGGAGATGGGGATAACAGAAGACGAATGGTA TGCAAAGCAATTTGAGATTAGAGGTGATAAACCACCTCCTTTAGAAACATCTTGGGCTGGTCCGATGGTTCTTAGGCAAATTCCGCCGCGTGATTGGCCT CCCAGAGGTTGGGAAGTTGATAGGAAGGAGCTGGAGTTTATTAGGGAAGCTCATAAGTTAATGGCTGAAAGAGTTTGGCTTGAGGATTTGGATAAGGATT TGAGAGTTGGTGAAGATGCTACTGTTGATAAGATGTGTTTGGAGAGGTTTAAGGTTTTCTTGAAACAATACAAGGAATGGGTTGAAGATAATAAAGATAG GTTGGAGGAAGAATCTTACAAGgttcgtttttttttttgaacaatgagatattgttagcttagtggtggctaagagaaggattctaataaagatgatgtt tttatttatacagCTCGATCAGGATTTTTATCCGGGTAGGAGGAAAAGAGGGAAGGATTACGAAGATGGGATGgtaaatattattatgctac◄tggattt gattgtttgattagtttgctagatgatgaactgtttgtaagttaattgctttatttttcttt►gtgcagTATGAGCTTCCCTTTTACTATCCAGGGATGg taagaattcttattctaagccttgtatattgtaactaatgattggtttaaatgagcaatatcgta◄atgtccatgcagGTTTGTGAAGGCACAGTTACCA CTTTACATCTGTATCAGGGAGCGTTTGTTGACATTGGAGGTGTTCATGAAGGgtatgtttatgtctctttactttgtaaagatagacttaccgtggttct tgtatttagggtatataacgtaatataatgttgtctcttgtttcatatgctttttttgaaagatgtaagtttatgtgtctattggtttgcagATGGGTAC CTATAAAAGGTAATGACTGGTTTTGGATCCGGCATTTCATAAAAGTTGGGATGCATGTTATCGTTGAAATCACGgtaatcttaaggcacatattcttctt tcgcatttataaaaatctgaatggaaattgcttcattctcctttttcttttgttctttcagGCAAAAAGAGATCCATACCGGTTTCGGTTTCCCTTGGAG TTGCGCTTCGTCCATCCTAACATAGATCACATGATgtatgtaattcacacgtatttaattctctttacatatccagtaaaaattggcattttggttctgt cctcaatggtcttggttatggtatatgtgttgactgtttttacattcctgctccagATTTAATAAATTTGACTTCCCACCAATATTCCATCGTGATGGGG ATACTAATCCAGATGAGATACGGgtcagtagaatcctttcctagaatatcaatccatttcgtgttctcgtgaagagtctccctcttatctaatacattgt ttgtacagCGAGATTGTGGAAGACCTCCTGAACCTAGAAAAGATCCAGGATCAAAGCCAGAGGAGGAAGGGCTGCTCTCTGATCACCCTTATGTCGACAA Ggtattttcctgagcaaaagggttggttatgtgatttttgctttgtttactcattaggtttattggctttctaaattttgtgaaaccgtcaacacatttc tttcccgtttgcagTTGTGGCAGATACATGTAGCTGAGCAAATGATTTTGGGTGATTACGAAGCTAACCCTGCAAAATACGAAGGCAAAAAGCTATCAGA ATTATCTGATGATGAAGACTTTGATGAACAAAAGGATATCGAGTATGGCGAAGCTTATTATAAGAAAACCAAATTGCCAAAAGTGATTCTGgtgagagtt tcttctggtgtgttcgtgaaaccatactgtcttaagctttgtgattaaatgtgttctatttctggcagAAAACCAGTGTCAAGGAACTTGACTTAGAGGC TGCATTGACCGAGCGCCAGgtttaaattctcttccctacttgtcgtcaccaatttcctttaacccactgctacggaaatattctcgtttgtatttgttta tttttaatagatttccacttcacactgtcttggtaactccgattgtcgtcacagttccattttaaggctttgcactttgtaattgacacattgttgtatg aatcttttatactgatagtggttaataactcaatactctcctgttgtcttgtgcagCACCACAATAAACTAATGATGGAAGCTAAAGCAAGAGGAGAAGG ATACAAAATTGACAAGCTCAGACGAAATATAGAGATGGACGAGTATGATTTCTTACACTGGCGCCGATCTTTGGAGGAAAGAGAAGCATTGCTCAGAGAT ATCAGCTCgtaagtaaaaaaaagttcactttgatgtttttcaaagaaagtgtttagatgaagaagatttattttgcagTCGGCAAGCACTTGGTTTACCA TTGGAGGAACCAGGGAGGTACAAGCCAGGAAGCTTCTTTGGGAAAGACCAGTACGATCCAACAAGTGCATTATATCAGTATGACTACTGGGGAGAGCCAA AGAACTCAGAGATTAGCAAGCAAGAGAGAATGAAGGATGCACACAACAAATCCATTGTTGGGAAAGGCAATGTGTGGTATGACATGTCTTACGATGATGC GATTAAGCAGACAATAGAGAAAAGAAAAGAAGGGTCTACCTTGGCGAGTCAAGAAGAAGAAACAGAGTCAGAGGAAGAAGAAGAGGATGACGATGATTTT GACGATTTTGACTATAGCATTCTGAGTGATGAGAGCAGTATCGGTTACTCGGAACAGCAACCTCTTGTTAACGGTACTCAAGTCTTGACAGACTGAtgtt taaaaggaaagtaaaaataagaaattgtcgaggttgatttatttgaatttttgtctgttaggtttgatctatttgatagtttttttttttcatttcttct tatcccggagatagtaaaatcagtttcttattaacttagccagacgtttgggatcttgtagtacaccgttgaacgttaggaacgtgacgttttttgtttt ttctatcaatcgtcgtcagagaaggtagtcttgacaccgcaaaatacgcctaaatgtttctcttgtttcttctgtttgggctccaaaacatcaacttcta tcaaaaggctttctcgttcgtacctggaatatcaaaaacccttgtcatctctccgtgtataccaaaaacttcacaccatgtgtgctctttgatgacaaaa ctc
Border_1 (94990_LBD)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
CCTGTAGCATAATAATATTTACCATCCCATCTTCGTAATCCTTCCCTCTTTTCCTCCTACCCGGATAAAAATCCTGATCGAGCTGTATAAATAAAAACAT
CATCTTTATTAGAATCCTTCTCTTAGCCACCACTAAGCTAACAATATCTCATTGTTCAAAAAAAAAAC
| Start of BLAST Alignment: | NT 1070 / Intron 4 of 11 |
| First 15 bp Perfect Match: | NT 906 / Intron 2 of 11 |
BLAST Details: Query Sequence: 94990_LBD Length: (368 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g48500 68416.t04916 expressed protein 810 6.0e-31 1 At3g32205 68416.t03770 non-LTR retrotransposon family (LI... 170 0.993 1 At3g61260 68416.t06335 DNA-binding family protein / remor... 169 0.993 1 At1g60075 68414.t06198 pseudogene, F-box protein-related ... 165 0.9996 1 >At3g48500 68416.t04916 expressed protein Length = 3242 Minus Strand HSPs: Score = 810 (127.6 bits), Expect = 6.0e-31, P = 6.0e-31 Identities = 250/333 (75%), Positives = 250/333 (75%), Strand = Minus / Plus Query: 357 GAACAATGAGATATTGTTAGCTTAGTGGTGGCTAAGAGAAGGATTCTAATAAAGATGATG 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 751 GAACAATGAGATATTGTTAGCTTAGTGGTGGCTAAGAGAAGGATTCTAATAAAGATGATG 810 Query: 297 TTTTTATTTATACAGCTCGATCAGGATTTTTATCCGGGTAGGAGGAAAAGAGGGAAGGAT 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 811 TTTTTATTTATACAGCTCGATCAGGATTTTTATCCGGGTAGGAGGAAAAGAGGGAAGGAT 870 Query: 237 TACGAAGATGGGATGGTAAATATTATTATGCTACAGGATAT-ATTGTG-GTGTAAACAAA 180 |||||||||||||||||||||||||||||||||| |||| | ||||| | || Sbjct: 871 TACGAAGATGGGATGGTAAATATTATTATGCTACTGGATTTGATTGTTTGATTAGTTTGC 930 Query: 179 TTGACGCTTAGACAACTTAATAACACA-TTGCGGACGTTTTTAATGTACTGAATTAACGC 121 | || | | | || || ||| | |||| |||| ||| | | || | | Sbjct: 931 TAGATGATGA-ACTGTTTG-TAAGTTAATTGCTTTATTTTTCTTTGTGCAGTATGAGCTT 988 Query: 120 CGAATTGAAT-TCGATTTGGTG-TATCGAGATTGGTTATGAAATTCAGATGC-TAGTGTA 64 | || | | || | | || || || ||| |||| | | || || |||| Sbjct: 989 CCCTTTTACTATCCAGG-GATGGTAA-GA-ATTC-TTATTCTAAGCCT-TGTATATTGTA 1043 Query: 63 A-TG-T-ATTGGTA-ATTTGGGAAGATATAATA 35 | | | |||||| | || | | |||| || Sbjct: 1044 ACTAATGATTGGTTTAAATGAGCA-ATATCGTA 1075 >At3g32205 68416.t03770 non-LTR retrotransposon family (LINE) has a 1.3e-22 P-value blast match to GB:AAB41224 ORF2 (LINE-element) [Rattus norvegicus] Length = 3677 Minus Strand HSPs: Score = 170 (31.6 bits), Expect = 5.0, P = 0.993 Identities = 158/277 (57%), Positives = 158/277 (57%), Strand = Minus / Plus
Border_2 (94990_RBU)
ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGA
TTACGCCAAGCTCGCAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTATGCATG
CTAGCATATGCCATGGAAACTATCAGTGCAGTATGAGCTTCCCTTTTACTATCCAGGGATGGTAAGAATTCTTATTCTAAGCCTTGTATATTGTAACTAA
TGATTGGTTTAAATGAGCAATATCGTAATGTCCATGCAGGTTTGTGAAGGCACAGTTACCACTTTACATCTGTATCAGGGAGCGTTTGTTGACATTGGAG
GTGTTCATGAAGGGTATGTTTATGTCTCTTTACTTTGTAAAGATAGACTTACCGTGGTTCTTGTATTTAGGGTATATAACGTAATATAATGTTGTCTCTT
GTTTCATATGCTTTTTTTGAAAGATGTAAGTTTATGTGTCTATTGGTTTGCAGATGGGTACCTATAAAAGGTAATGACTGGTTTTGGATCCGGCATTTCA
TAAAAGTTGGGATGCATGTTATCGTTGAAATCACGGTAATCTTAAGGCACATATTCTTCTTTCGCATTTATAAAAATCTGAATGGAAATTGCTTCATTCT
CCTTTTTCTTTTGTTCTTTCAGGCAAAAAGAGATCCATACCGGTTTCGGTTTCCCTTGGAGTTGCGCTTCGTCCATCCTAACATAGATCACATGATGTAT
GTAATTCACACGTATTTAATTCTCTTTACATATCCAGAAAAATTGGCATTTTGGTTCTGTCCTCAATGGTCTTGGTTATG
| Start of BLAST Alignment: | NT 968 / Intron 2 of 11 |
| First 15 bp Perfect Match: | NT 968 / Intron 2 of 11 |
BLAST Details: Query Sequence: 94990_RBU Length: (880 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g48500 68416.t04916 expressed protein 3265 2.8e-143 1 At3g11520 68416.t01258 cyclin, putative (CYC2) similar to... 228 0.076 1 At1g49670 68414.t05097 ARP protein (REF) identical to ARP... 223 0.15 1 At3g23060 68416.t02612 zinc finger (C3HC4-type RING finge... 209 0.48 1 >At3g48500 68416.t04916 expressed protein Length = 3242 Plus Strand HSPs: Score = 3265 (495.9 bits), Expect = 2.8e-143, P = 2.8e-143 Identities = 655/656 (99%), Positives = 655/656 (99%), Strand = Plus / Plus Query: 226 GTGCAGTATGAGCTTCCCTTTTACTATCCAGGGATGGTAAGAATTCTTATTCTAAGCCTT 285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 974 GTGCAGTATGAGCTTCCCTTTTACTATCCAGGGATGGTAAGAATTCTTATTCTAAGCCTT 1033 Query: 286 GTATATTGTAACTAATGATTGGTTTAAATGAGCAATATCGTAATGTCCATGCAGGTTTGT 345 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1034 GTATATTGTAACTAATGATTGGTTTAAATGAGCAATATCGTAATGTCCATGCAGGTTTGT 1093 Query: 346 GAAGGCACAGTTACCACTTTACATCTGTATCAGGGAGCGTTTGTTGACATTGGAGGTGTT 405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1094 GAAGGCACAGTTACCACTTTACATCTGTATCAGGGAGCGTTTGTTGACATTGGAGGTGTT 1153 Query: 406 CATGAAGGGTATGTTTATGTCTCTTTACTTTGTAAAGATAGACTTACCGTGGTTCTTGTA 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1154 CATGAAGGGTATGTTTATGTCTCTTTACTTTGTAAAGATAGACTTACCGTGGTTCTTGTA 1213 Query: 466 TTTAGGGTATATAACGTAATATAATGTTGTCTCTTGTTTCATATGCTTTTTTTGAAAGAT 525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1214 TTTAGGGTATATAACGTAATATAATGTTGTCTCTTGTTTCATATGCTTTTTTTGAAAGAT 1273 Query: 526 GTAAGTTTATGTGTCTATTGGTTTGCAGATGGGTACCTATAAAAGGTAATGACTGGTTTT 585 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1274 GTAAGTTTATGTGTCTATTGGTTTGCAGATGGGTACCTATAAAAGGTAATGACTGGTTTT 1333 Query: 586 GGATCCGGCATTTCATAAAAGTTGGGATGCATGTTATCGTTGAAATCACGGTAATCTTAA 645 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1334 GGATCCGGCATTTCATAAAAGTTGGGATGCATGTTATCGTTGAAATCACGGTAATCTTAA 1393 Query: 646 GGCACATATTCTTCTTTCGCATTTATAAAAATCTGAATGGAAATTGCTTCATTCTCCTTT 705 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1394 GGCACATATTCTTCTTTCGCATTTATAAAAATCTGAATGGAAATTGCTTCATTCTCCTTT 1453 Query: 706 TTCTTTTGTTCTTTCAGGCAAAAAGAGATCCATACCGGTTTCGGTTTCCCTTGGAGTTGC 765 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1454 TTCTTTTGTTCTTTCAGGCAAAAAGAGATCCATACCGGTTTCGGTTTCCCTTGGAGTTGC 1513 Query: 766 GCTTCGTCCATCCTAACATAGATCACATGATGTATGTAATTCACACGTATTTAATTCTCT 825 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1514 GCTTCGTCCATCCTAACATAGATCACATGATGTATGTAATTCACACGTATTTAATTCTCT 1573 Query: 826 TTACATATCCAG-AAAAATTGGCATTTTGGTTCTGTCCTCAATGGTCTTGGTTATG 880 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1574 TTACATATCCAGTAAAAATTGGCATTTTGGTTCTGTCCTCAATGGTCTTGGTTATG 1629 >At3g11520 68416.t01258 cyclin, putative (CYC2) similar to cyclin [Arabidopsis thaliana] GI:1360646; contains Pfam profiles PF00134: Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal domain; identical to cDNA cyclin box (cyc2) partial cds GI:456019 Length = 1907 Plus Strand HSPs: Score = 228 (40.3 bits), Expect = 0.079, P = 0.076 Identities = 186/327 (56%), Positives = 186/327 (56%), Strand = Plus / Plus