At3g16290 SYNGENTA 98346
Genomic Sequence (from TAIR)
caaacacatacatgagtgacactgacagaccggtttccgcgtctcgattcgtttttagcgtctgggcttcttaatgccttttttagagttaaatggccta agtttttgttattgggctttaagaagcctttttatattacgattgttctgtgttctgtttcttctatccctttagcctgggaaatgatgaagctcattgc tacgttttaatggcgatcactctatctcgactagcttggtttattgcaattcacttcttcatgtaagttaaattcactctacttcaattgaatcacatcA TGGCTTGTCGTTTCCCTCTGCATTCTTCGTCACCTTCTCAATTCCTTTCACCGGAAAATCGTCAGAGACTACCCAGAAATTACCCTTCAATCTCATGCCA AAACAATTCAGCTACGAACGTTGTCCATGAAGATGGTGATGATAACGACAAAGCCAAGACAAACCAAGTCAATCTTCTCGCAATACCAATCACACTCACT ATAATCTCCGCTTCTCTAGCCAAACCGTCGTTCGCGGCTGCGAAGGTAACGGAGAGAAAGAGAACTCAGAAGAAACCTCAGGAGGCTTTGACACTTGAAC AGCTTAAAGCTTGGTCCAAAGATTTACCTGTAGTTTCGAATCGTATACCTTATACTGACATTTTGAGCTTAAAAGCTGAAGGTAAGCTTAAGCATGTGAT AAAGCCTCCTAATTTAAGTTTGCGGCAAAAGGCAGAGCCTGTGTTAGTAGTTTTGGAGGATTCTAGAGTATTAAGGACTGTGTTGCCTTCTTTAGAGGGT AATAAGAGGTTTTGGGAACAATGGGATGAGTTAGGGATTGATGTACAATGTGTTAATGCTTATACTCCTCCGGTTAAGAGACCTCCTGTGCCGTCTCCTT ATTTAGGATTTTTGTGGAAAGTTCCTGCTTATATGTTAACATGGGTTAAGCCAAAGAAGGAGTCTAAACGTGCTGCTGAGTTGAAGAGAATGAGGGAGGA TTTCAAGAGGCAGAGGAAGGAGGAGATTGAGACGATGAAAGAGGAAAGAGTGATGATGGAAAAGACAATGAAGGCGCAGAAGAAACAACAGGAGAGGAAG AAAAGGAAGGCTG◄TTAGGAAGAAG►AAATACGAGGAGTCTCTGCGTGAGGCGAGGAAAAATTATCGAGATATGGCGGA◄TATGTGGGCAAGATTGGCTC AGGATCCTAATGTGGCTACTGCTCTTGGATTGGTATTCTTTTATATATTTTACCGTGTGGTGGTTCTCAACTATAGGAAGCAAAAGAAGGATTATGAAGA CAGGTTGAAGATTGAGAAGGCGGAAGCAGATGAGAGGAAGAAAATGAGGGAGTTGGAAAGGGAGATGGAGGGAATTGAGGAAGAGGATGAGGAGGTTGAG GAAGGTACAGGTGAGAAAAATCCTTACTTACAGATGGCGATGCAGTTCATGAAGTCAGGTGCACGTGTGAGACGAGCATCAAATAAGAGGTTACCTGAGT ATCTTGAGAGAGGTGTGGATGTCAAATTTACAGATGTTGCTGGACTTGGGAAGATTCGTCTTGAACTTGAGGAAATCGTTAAGTTTTTTACTCATGGAGA GATGTACCGCAGGAGAGGGGTCAAGATTCCAGgttgaatgttgtgaaaacttctgtttttccttatatcacctagtatttgatgttaagttatatgatct atgaaattctgctgtttgatcatttctttaattttgttttcgtttagGTGGTATTCTTTTATGTGGGCCTCCTGGGGTCGGAAAAACTTTACTGGCAAAA GCTGTAGCTGGTGAAGCAGGAGTCAATTTCTTCTCTATCTCTGCTTCTCAGTTTGTGGAAATATATGTTGGTGTTGGTGCATCTCGTGTCCGAGCATTAT ACCAAGAAGCTAGAGAAAATgtaagtctaataactttctatacctgtgttgatcgtagaacttaattctcacttttggatgcttctgagatcattcaagc agtacctcttggcttcttttctgttgattctcattgttatagtgaggatttagtctattactggatgttaattttaaggtggtctcactgcagGCTCCAT CTGTGGTCTTCATTGATGAATTGGATGCTGTTGGAAGGGAGCGTGGGTTAATAAAGGGTTCTGGAGGACAAGAAAGGGATGCCACTCTTAATCAGgttcc agacatttcagattgtgtaatagttttcttcgttatataacgggatggtaattttattcatttttttgtgtcccagCTACTTGTTTCTTTAGATGGTTTT GAAGGAAGGGGAGAGGTCATCACCATTGCTTCCACAAACAGACCAGACATTCTCGATCCTGCGCTTGTGAGGCCTGGACGGTTCGACCGCAAAATCTTTA TCCCTAAACCTGGTCTTATTGGACGGATGGAAATTCTGCAGgtaacggcgtggtatctgtgtttatgtattcttaaacttgtaaatttgcaacaaaaaaa aaagaggttaaaagtagagttttgtcctcggtccaaatttatatttttgttttggttttgctgtttagGTTCATGCTCGTAAGAAGCCGATGGCTGAAGA TTTAGACTATATGGCAGTTGCTAGCATGACAGATGGCATGGTTGGAGCAGAGCTTGCTAATATTGTTGAGATCGCGGCAATTAATATGATGCGTGATGGA AGAACAGAGgtgggatcaatatttttagttcaaattagttatatctgctcttgttttttggatgggtttggtttcaaatgttaggatcgtgtagcatctg gtaatatggtgtgtgtgaattaaattaagtgattggatgttgtgctcgataggaagcttaggctaatattaagtttagaagtctatttttgattccagca agtaaaagactgagaaatcatctatattctgtaactctaatgcagTTAACAACAGATGATTTGCTTCAAGCTGCACAAATAGAAGAAAGAGGAATGTTAG ATAGAAAAGACAGGAGCTTGGAGACATGGCGACAAGTTGCGATCAATGAAGCTGCAATGGCTGTTGTAGCAGTGAACTTTCCTGATATGAAGAATATAGA ATTTgtaggtttcttaaatctcttttccccttcatacattgaatgaagcttcaactttctgttttaccgcaccgtgacatttcgatgaccttgaccagCT GACAATCAACCCTAGAGCTGGTAGAGAATTGGGTTATGTCCGGGTGAAGATGGATCATATCAAATTTAAGGAAGGCATGCTTAGgtttgtggctttcatc atacagatttactttcatgattacacgggttctttatgttaatctatatgtcctttggtggtctactatatgtagTCGACAATCCATCTTGGATCACATC ACTGTTCAGTTAGCACCCCGTGCTGCAGATGAACTATGGTACGGTGAGGATCAGgtgagagatatgatatatcattttactcttctctaataactgtggt catatttttttttagtttaccaacctttgctaatgatttgttacagTTAAGCACGATATGGGCTGAAACATCGGATAACGCAAGATCAGCTGCTCGATCA TTGGTTCTTGGTGGTCTTTCTGATAAGCATCATGGCTTGAATAACTTCTGGGTAGCTGATCGAATTAACgtaaggccatatcttgacattgttttcactt cagttttcagagaacagatatcatcttctgatacatggatttgcagGATATTGATGTGGAGGCATTGCGGATATTGAACATGTGTTACGAGCGTGCTAAA GAGgtaaagtagacttctaaatcaactacatctatatcatagcatctcctttatattggtcttgttaaatatatatttacaaacgcatacaccagATTCT TGGAAGAAACAGGACGCTCATGGACGAGGTGGTAGAGAAACTGGTTCAAAAGAAAAGTCTAACGAAACAAGAATTCTTCACTCTTGTTGAGCTCTATGGG TCCAGTAAACCAATGCCACCGAGTATCCTTGAACTTAGGAAGATCAAACGGCTTGAGCTAGAAGAGATGGTGCTGAAACTGGACATGACTACCGCAAGAA ACAGTTCATAAgatgattgtaatttggagaaaagagacagttcgtgacaatcgtagggaataaacatcaaaaacccattatagagacaatgaggttgatc ctttatctatatttcctctgtaatctttgtaatagtacatgttagataattctttgagcttcaatatagtataacacttctttttatccatattgaagca atagtcaattttaaattgtttcacatatcttgaaaaaaggattatgaatttttatgtcatgaacttatgtggagcatgtggattattttaatttgctata tataaaaattggaagacattgaacaatgggcacatgctaatccatgatttttctttttgttaggtatttaggtgaaattgcaaattgatgagaatcaaat caa
Border_1 (98346_LB2)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
CCTCGTATTCAGCCTTCCTTTTCTTCCTCTCCTGTTGTTTCTTCTGCGCCTTCATTGTCTTTTCCATCATCACTCTTTCCTCTTTCATCGTCTCAATCTC
CTCCTTCCTCTGCCTCTTGAAATCCTCCCTCATTCTCTTCAACTCAGCAGCACGTTTAGACTCCTTCTTTGGCTTAACCCATGTTAACATATAAGCAGGA
ACTTTCCACAAAAATCCTAAATAAGGAGACGGCACAGGAGGTCTCTTAACCGGAGGAGTATAAGCATTAACACATTGTACATCAATCCCTAACTCATCCC
ATTGTTCCCAAAACCTCTTATTACCCTCTAAAGAAGGCAACACAGTCCTTAATACTCTAGAATCCTCCAAAACTACTAACACAGGCTCTGCCTTTTGCCG
CAAACTTAAATTAGGAGGCTTTATCAC
| Start of BLAST Alignment: | NT 878 / Exon 1 of 11 |
| First 15 bp Perfect Match: | NT 814 / Exon 1 of 11 |
BLAST Details: Query Sequence: 98346_LB2 Length: (627 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g16290 68416.t01829 FtsH protease, putative contains s... 2126 1.3e-91 1 At3g27720 68416.t03138 zinc finger protein-related contai... 237 0.013 1 At1g76770 68414.t08173 heat shock protein-related contain... 224 0.038 1 At3g17260 68416.t01960 hAT-like transposase family (hobo/... 226 0.045 1 >At3g16290 68416.t01829 FtsH protease, putative contains similarity to cell division protein FtsH GI:1652085 from [Synechocystis sp. PCC 6803] Length = 3809 Minus Strand HSPs: Score = 2126 (325.0 bits), Expect = 1.3e-91, P = 1.3e-91 Identities = 454/484 (93%), Positives = 454/484 (93%), Strand = Minus / Plus Query: 627 GTGATAAAGCCTCCTAATTTAAGTTTGCGGCAAAAGGCAGAGCCTGTGTTAGTAGTTTTG 568 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 397 GTGATAAAGCCTCCTAATTTAAGTTTGCGGCAAAAGGCAGAGCCTGTGTTAGTAGTTTTG 456 Query: 567 GAGGATTCTAGAGTATTAAGGACTGTGTTGCCTTCTTTAGAGGGTAATAAGAGGTTTTGG 508 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 457 GAGGATTCTAGAGTATTAAGGACTGTGTTGCCTTCTTTAGAGGGTAATAAGAGGTTTTGG 516 Query: 507 GAACAATGGGATGAGTTAGGGATTGATGTACAATGTGTTAATGCTTATACTCCTCCGGTT 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 517 GAACAATGGGATGAGTTAGGGATTGATGTACAATGTGTTAATGCTTATACTCCTCCGGTT 576 Query: 447 AAGAGACCTCCTGTGCCGTCTCCTTATTTAGGATTTTTGTGGAAAGTTCCTGCTTATATG 388 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 577 AAGAGACCTCCTGTGCCGTCTCCTTATTTAGGATTTTTGTGGAAAGTTCCTGCTTATATG 636 Query: 387 TTAACATGGGTTAAGCCAAAGAAGGAGTCTAAACGTGCTGCTGAGTTGAAGAGAATGAGG 328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 637 TTAACATGGGTTAAGCCAAAGAAGGAGTCTAAACGTGCTGCTGAGTTGAAGAGAATGAGG 696 Query: 327 GAGGATTTCAAGAGGCAGAGGAAGGAGGAGATTGAGACGATGAAAGAGGAAAGAGTGATG 268 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 697 GAGGATTTCAAGAGGCAGAGGAAGGAGGAGATTGAGACGATGAAAGAGGAAAGAGTGATG 756 Query: 267 ATGGAAAAGACAATGAAGGCGCAGAAGAAACAACAGGAGAGGAAGAAAAGGAAGGCTGAA 208 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 757 ATGGAAAAGACAATGAAGGCGCAGAAGAAACAACAGGAGAGGAAGAAAAGGAAGGCTGT- 815 Query: 207 TACGAGGAT-ATATT-GTGGTGTAAACAAATTGACGCTTAGACAACTTAATAACACATTG 150 || || || | || | || || | ||| || || || ||| | | || | Sbjct: 816 TAGGAAGAAGAAATACGAGGAGTCT-CTGCGTGAGGCGAGGAAAAATTATCGAGATATGG 874 Query: 149 CGGA 146 |||| Sbjct: 875 CGGA 878 >At3g27720 68416.t03138 zinc finger protein-related contains Pfam:PF01485 IBR domain Length = 1746 Minus Strand HSPs: Score = 237 (41.6 bits), Expect = 0.013, P = 0.013 Identities = 97/144 (67%), Positives = 97/144 (67%), Strand = Minus / Plus
Border_2 (98346_LB1)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTCAATTTGTTTAATGTG
TTATTAAATACGAGGAGTCTCTGCGTGAGGCGAGGAAAAATTATCGAGATATGGCGGATATGTGGGCAAGATTGGCTCAGGATCCTAATGTGGCTACTGC
TCTTGGATTGGTATTCTTTTATATATTTTACCGTGTGGTGGTTCTCAACTATAGGAAGCAAAAGAAGGATTATGAAGACAGGTTGAAGATTGAGAAGGCG
GAAGCAGATGAGAGGAAGAAAATGAGGGAGTTGGAAAGGGAGATGGAGGGAATTGAGGAAGAGGATGAGGAGGTTGAGGAAGGTACAGGTGAGAAAAATC
CTTACTTACAGATGGCGATGCAGTTCATGAAGTCAGGTGCACGTGTGAGACGAGCATCAAATAAGAGGTTACCTGAGTATCTTGAGAGAGGTGTGGATGT
CAAATTTACAGATGTTGCTGGACTTGGGAAGATTCGTCTTGAACTTGAGGAAATCGTTAAGTTTTTTACTCATGGAGAGATGTACCGCAGGAGAGGGGTC
AAGATTCCAGGTTGAATGTTGTGAAAACTTCTGTTTTTCCTTATATCACCTAGTATTTGATGTTAAGTTATATG
| Start of BLAST Alignment: | NT 825 / Exon 1 of 11 |
| First 15 bp Perfect Match: | NT 825 / Exon 1 of 11 |
BLAST Details: Query Sequence: 98346_LB1 Length: (774 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g16290 68416.t01829 FtsH protease, putative contains s... 2425 2.1e-105 1 At5g18860 68418.t02029 inosine-uridine preferring nucleos... 203 0.61 1 >At3g16290 68416.t01829 FtsH protease, putative contains similarity to cell division protein FtsH GI:1652085 from [Synechocystis sp. PCC 6803] Length = 3809 Plus Strand HSPs: Score = 2425 (369.9 bits), Expect = 2.1e-105, P = 2.1e-105 Identities = 509/569 (89%), Positives = 509/569 (89%), Strand = Plus / Plus Query: 206 AAATACGAGGAGTCTCTGCGTGAGGCGAGGAAAAATTATCGAGATATGGCGGATATGTGG 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 826 AAATACGAGGAGTCTCTGCGTGAGGCGAGGAAAAATTATCGAGATATGGCGGATATGTGG 885 Query: 266 GCAAGATTGGCTCAGGATCCTAATGTGGCTACTGCTCTTGGATTGGTATTCTTTTATATA 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 886 GCAAGATTGGCTCAGGATCCTAATGTGGCTACTGCTCTTGGATTGGTATTCTTTTATATA 945 Query: 326 TTTTACCGTGTGGTGGTTCTCAACTATAGGAAGCAAAAGAAGGATTATGAAGACAGGTTG 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 946 TTTTACCGTGTGGTGGTTCTCAACTATAGGAAGCAAAAGAAGGATTATGAAGACAGGTTG 1005 Query: 386 AAGATTGAGAAGGCGGAAGCAGATGAGAGGAAGAANNNNNNNNNNNNNNNNNNNNNNNNN 445 ||||||||||||||||||||||||||||||||||| Sbjct: 1006 AAGATTGAGAAGGCGGAAGCAGATGAGAGGAAGAAAATGAGGGAGTTGGAAAGGGAGATG 1065 Query: 446 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGTACAGGTGAGAAAAATCCTTAC 505 ||||||||||||||||||||||||| Sbjct: 1066 GAGGGAATTGAGGAAGAGGATGAGGAGGTTGAGGAAGGTACAGGTGAGAAAAATCCTTAC 1125 Query: 506 TTACAGATGGCGATGCAGTTCATGAAGTCAGGTGCACGTGTGAGACGAGCATCAAATAAG 565 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1126 TTACAGATGGCGATGCAGTTCATGAAGTCAGGTGCACGTGTGAGACGAGCATCAAATAAG 1185 Query: 566 AGGTTACCTGAGTATCTTGAGAGAGGTGTGGATGTCAAATTTACAGATGTTGCTGGACTT 625 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1186 AGGTTACCTGAGTATCTTGAGAGAGGTGTGGATGTCAAATTTACAGATGTTGCTGGACTT 1245 Query: 626 GGGAAGATTCGTCTTGAACTTGAGGAAATCGTTAAGTTTTTTACTCATGGAGAGATGTAC 685 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1246 GGGAAGATTCGTCTTGAACTTGAGGAAATCGTTAAGTTTTTTACTCATGGAGAGATGTAC 1305 Query: 686 CGCAGGAGAGGGGTCAAGATTCCAGGTTGAATGTTGTGAAAACTTCTGTTTTTCCTTATA 745 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1306 CGCAGGAGAGGGGTCAAGATTCCAGGTTGAATGTTGTGAAAACTTCTGTTTTTCCTTATA 1365 Query: 746 TCACCTAGTATTTGATGTTAAGTTATATG 774 ||||||||||||||||||||||||||||| Sbjct: 1366 TCACCTAGTATTTGATGTTAAGTTATATG 1394 >At5g18860 68418.t02029 inosine-uridine preferring nucleoside hydrolase family protein contains Pfam profile PF01156: Inosine-uridine preferring nucleoside hydrolase Length = 5136 Plus Strand HSPs: Score = 203 (36.5 bits), Expect = 0.94, P = 0.61 Identities = 215/385 (55%), Positives = 215/385 (55%), Strand = Plus / Plus