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At2g22870 SYNGENTA 98507

Genomic Sequence (from TAIR)

cagtaaactgattaaacctagctatgtgggttatagatctcgaactatttactcgaagtacattaagttatagaactttcatttcggagaaaataaggat
aaaacttttattttatagacatatgaactagagttaaaatatatgagctctatctactgatactttttatgagaaaatagaccttttttctaaaattatc
tttgatgaaaattttgtttggtactccaacatgtgtacaaaagttgcgctagatcaaaacatatgtaagtaacacaacttatgacattcttgattgcaaa
attagttaaaatctagttgtttttatattattgttgacacaaaaaaaaatgtcagcatatgaaagcctccgtctgaagcagaaggaacgactctggtcta
aaactctaaaaaccctatcttcttcgttctaaacccaaaacacacacaaaacaaaATGGTG◄CTACTTCTCCGATATCGATCCTTA►ACGATAAATCTCA
CTCCTCTAATACCCAAATCTCAAAAATTCCACACTCTCCAATCATTTCGTAACCCTAATTTCATCTCCATCCCAAAAATCTCAGCCTCCACGAACAATCC
AACAACAACAACGAATCGGTCGATCTCCGACGCGACTAAATTCGCTAAGTCAGTGTTATTCATACCTCCTGGTGTAGAGATTGAGGAACTAACAGATGAT
ATGGTTCTTCCGGGTTCAAATATCGTAATCGGACCTTTTGCGGGTCATTCACAAATCAAAGAAGTTGAATTTGTTAAAAGTAGTGCTCGTGCTAGAGATT
GTCCTAAAGATGATCGTCCTGAGATTGCGATTTTGGGTCGTTCTAATGTTGGCAAGTCTTCGCTTATCAATTGTTTGGTTCGTAAGAAAGAAGTTGCTCT
TACTTCTAAGAAACCTGgtttgtgtttttattcctttcaatttggttataaaaatcgaaccttttaagttttggaaatctgaaagtttggatttttattt
ggtgaaacagGGAAGACTCAGCTTATAAATCACTTCTTGGTGAATAAGAGTTGGTACATTGTGGATTTGCCTGGTTATGGgtatgtgttttgatctcttg
cttttggataaaacaatcagttttctttggctaaatttggtatatttcagttcattttggtaaaatttaggataagagttcggtatttttggtttggtag
ttcgattggcttagttctgaactggtacatttggataaaatttcagtttagtatagtctattagtaattttacttaaacttagaattaagttttggtaaa
tttagtaaggtggttccgaaccgaaccggttgagttggctaactcggtttgaactgatacatagtggatttggatatgtatttgttgatatcttgctttc
agataaacgttattattgtttgatgttgagaatatatttgcagATTTGCTAAAGTTTCAGATGCTGCGAAAACAGATTGGTCTGCGTTTACTAAAGGTTA
CTTCTTGAATAGAGACAGTCTTGTTTGTGTTCTACTTCTCATCGATGCAAGTGTTCCTCCTCAGAAGATTGATCTTGATTGTGCTAATTGGCTTGGTCGC
AACAATgtatgtggtaccaattctggcttttgtgtgttcagtgaaatgttgctttgaggacttgttaaatgacgtttttcgatgatttttcagGTACCGA
TGACTTTCGTGTTTACGAAATGCGATAAAATGAAAGCAACGAAAGGGAAAAGACCTGATGAGAACATTAAAGCTTTCCAACAAATCATTAGAGAGAATTT
TAAAGTACATCCTCCTTGGATTTTGACGAGTAGTGTATCTGGTTTAGGCAGAGACGAGCTTCTTCTTCACATGTCGCAGCTGAGAAACTACTGGGATCAA
TAGgtagcgcgtaaatttcgtaaacaaatgttcgaaaaggtcggttttgaatcattggttatatcaaattgtagttttgtaatgtaacagtaacttttgt
atttaaagataagatcataaagtgttactactacagttctaattctgatgaaacaaattcatgaattgccgaaaaattggcaagaatagcttctttcttg
ctaccatcttgatagattagcaggactaagcagagggaaagcttcccagaaccgagatgacgaaggtgaaagatcaaacgcgaacggattatccttagct
gttgttgtatcatcagaaatcttgactggtttagcttcaacttgatgtacctcttgctcaacgtcttctgcaccagttagcctctgaactaactccttga
agttaacaggctcgactctgtaaactttaggatgcatcctctgaggcaagcccgttacgggttttttccatggctttgccggttgcttacgggtcgaatg
aagtgaggagttatgagagaaacatggttgtgaagtagcttccatgacgatcagaagtttctgtaatacacaaatgatttgaagcgaagtgtcttacctt
ga

Border_1 (98507_LB2)


GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCATTTTGTTT
TGTGTGTGTTTTGGGTTTAGAACGAAGAAGATAGGGTTTTTAGAGTTTTAGACCAGAGTCGTTCCTTCTGCTTCAGACGGAGGCTTTCATATGCTGACAT
TTTTTTTTGTGTCAACAATAATATAAAAACAACTAGATTTTAACTAATTTTGCAATCAAGAATGTCATAAGTTGTGTTACTTACATATGTTTTGATCTAG
CGCAACTTTTGTACACATGTTGGAGTACCAAACAAAATTTTCATCAAAGATAATTTTAGAAAAAAGGTCTATTTTCTCATAAAAAGTATCAGTAGATAGA
GCTCATATATTTTAACTCTAGTTCATATGTCTATAAAATAAAAGTTTTATCCTTATTTTCTCCGAAATGAAAGTTCTATAACTTAATGTACTTMGAGTAA
ATAGTTCGAGATCTATAACCCACATAGCTAGGTTTAATCAGTTTTACTGTATACTTTACCCATTGATAAACCAATTAAACTTTAATTATAACCAATAACT
TTGCAAAAAAACTTATTATAAAGTTTGGACCTTTGTCTATATCTAGAAGTTGGAATGTGCACCTTGTAGGAAAAAATCGGGGTCTCCCTTTGGGGGGTTT
TTTT

Start of BLAST Alignment:	NT 6 / Exon 1 of 4
First 15 bp Perfect Match:	NT 6 / Exon 1 of 4

BLAST Details:
Query Sequence: 98507_LB2 
Length: (804 letters) 
Database: TIGR AGI BAC Sequences (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

T20K9 35114                                                   2818  4.1e-121  1
MSD23 67800                                                    597  8.7e-21   1
F28B23 68109                                                   573  1.1e-19   1
T15G18 67094                                                   543  2.4e-18   1

Warning: Descriptions of 175 database sequences were not reported due to the

          limiting value of parameter V = 100.


T20K9 35114
        Length = 86,686

  Minus Strand HSPs:

 Score = 2818 (428.9 bits), Expect = 4.1e-121, P = 4.1e-121
 Identities = 589/616 (95%), Positives = 590/616 (95%), Strand = Minus / Plus

Query:   803 AAAAAACCCCCCAAAGGGAGACCCCGATTTTTTCCTACAAGGTGCACATTCCAACTTCTA 744
             |||| |  | ||||||| |||| |  || | | |||||||| ||||||||| ||||||||
Sbjct: 34576 AAAATATACACCAAAGGTAGACACA-ATATCT-CCTACAAG-TGCACATTC-AACTTCTA 34631

Query:   743 GATATAGACAAAGGTCCAAACTTTATAATAAGTTTTTTTGCAAAGTTATTGGTTATAATT 684
             ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 34632 GATATAGACAAAGTTCCAAACTT-ATAATAAGTTTTTTTGCAAAGTTATTGGTTATAATT 34690

Query:   683 AAAGTTTAATTGGTTTATCAATGGGTAAAGTATACAGTAAAACTGATTAAACCTAGCTAT 624
             || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 34691 AA-GTTTAATTGGTTTATCAATGGGTAAAGTATACAGTAAA-CTGATTAAACCTAGCTAT 34748

Query:   623 GTGGGTTATAGATCTCGAACTATTTACTCKAAGTACATTAAGTTATAGAACTTTCATTTC 564
             |||||||||||||||||||||||||||||+||||||||||||||||||||||||||||||
Sbjct: 34749 GTGGGTTATAGATCTCGAACTATTTACTCGAAGTACATTAAGTTATAGAACTTTCATTTC 34808

Query:   563 GGAGAAAATAAGGATAAAACTTTTATTTTATAGACATATGAACTAGAGTTAAAATATATG 504
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34809 GGAGAAAATAAGGATAAAACTTTTATTTTATAGACATATGAACTAGAGTTAAAATATATG 34868

Query:   503 AGCTCTATCTACTGATACTTTTTATGAGAAAATAGACCTTTTTTCTAAAATTATCTTTGA 444
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34869 AGCTCTATCTACTGATACTTTTTATGAGAAAATAGACCTTTTTTCTAAAATTATCTTTGA 34928

Query:   443 TGAAAATTTTGTTTGGTACTCCAACATGTGTACAAAAGTTGCGCTAGATCAAAACATATG 384
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34929 TGAAAATTTTGTTTGGTACTCCAACATGTGTACAAAAGTTGCGCTAGATCAAAACATATG 34988

Query:   383 TAAGTAACACAACTTATGACATTCTTGATTGCAAAATTAGTTAAAATCTAGTTGTTTTTA 324
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34989 TAAGTAACACAACTTATGACATTCTTGATTGCAAAATTAGTTAAAATCTAGTTGTTTTTA 35048

Query:   323 TATTATTGTTGACACNNNNNNNNNTGTCAGCATATGAAAGCCTCCGTCTGAAGCAGAAGG 264
             |||||||||||||||         ||||||||||||||||||||||||||||||||||||
Sbjct: 35049 TATTATTGTTGACACAAAAAAAAATGTCAGCATATGAAAGCCTCCGTCTGAAGCAGAAGG 35108

Query:   263 AACGACTCTGGTCTAAAACTCTAAAAACCCTATCTTCTTCGTTCTAAACCCAAAACACAC 204
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35109 AACGACTCTGGTCTAAAACTCTAAAAACCCTATCTTCTTCGTTCTAAACCCAAAACACAC 35168

Query:   203 ACAAAACAAAATGGTG 188
             ||||||||||||||||
Sbjct: 35169 ACAAAACAAAATGGTG 35184


MSD23 67800
        Length = 43,479

  Plus Strand HSPs:

 Score = 597 (95.6 bits), Expect = 8.7e-21, P = 8.7e-21
 Identities = 254/392 (64%), Positives = 255/392 (65%), Strand = Plus / Plus

Border_2 (98507_LB)


GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACGATAAAT
CTCACTCCTCTAATACCCAAATCTCAAAAATTCCACACTCTCCAATCATTTCGTAACCCTAATTTCATCTCCATCCCAAAAATCTCAGCCTCCACGAACA
ATCCAACAACAACAACGAATCGGTCGATCTCCGACGCGACTAAATTCGCTAAGTCAGTGTTATTCATACCTCCTGGTGTAGAGATTGAGGAACTAACAGA
TGATATGGTTTCGGGGAAA

Start of BLAST Alignment:	NT 30 / Exon 1 of 4
First 15 bp Perfect Match:	NT 30 / Exon 1 of 4

BLAST Details:
Query Sequence: 98507_LB 
Length: (419 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At2g22870 68415.t02550 expressed protein                      1096  9.4e-45   1
At2g14730 68415.t01581 hypothetical protein                    210  0.056     1
At5g09740 68418.t01021 histone acetyltransferase, putativ...   183  0.86      1
At5g10090 68418.t01058 tetratricopeptide repeat (TPR)-con...   180  0.93      1


>At2g22870 68415.t02550 expressed protein
        Length = 2050

  Plus Strand HSPs:

 Score = 1096 (170.5 bits), Expect = 9.4e-45, P = 9.4e-45
 Identities = 224/227 (98%), Positives = 224/227 (98%), Strand = Plus / Plus

Query:   192 ACGATAAATCTCACTCCTCTAATACCCAAATCTCAAAAATTCCACACTCTCCAATCATTT 251
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:    50 ACGATAAATCTCACTCCTCTAATACCCAAATCTCAAAAATTCCACACTCTCCAATCATTT 109

Query:   252 CGTAACCCTAATTTCATCTCCATCCCAAAAATCTCAGCCTCCACGAACAATCCAACAACA 311
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   110 CGTAACCCTAATTTCATCTCCATCCCAAAAATCTCAGCCTCCACGAACAATCCAACAACA 169

Query:   312 ACAACGAATCGGTCGATCTCCGACGCGACTAAATTCGCTAAGTCAGTGTTATTCATACCT 371
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   170 ACAACGAATCGGTCGATCTCCGACGCGACTAAATTCGCTAAGTCAGTGTTATTCATACCT 229

Query:   372 CCTGGTGTAGAGATTGAGGAACTAACAGATGATATGGTT-T-CGGGG 416
             ||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct:   230 CCTGGTGTAGAGATTGAGGAACTAACAGATGATATGGTTCTTCCGGG 276


>At2g14730 68415.t01581 hypothetical protein
        Length = 1761

  Minus Strand HSPs:

 Score = 210 (37.6 bits), Expect = 0.057, P = 0.056
 Identities = 174/294 (59%), Positives = 174/294 (59%), Strand = Minus / Plus