At4g18480 SYNGENTA 99807
Genomic Sequence (from TAIR)
gtgagattctactcaatcgacgagcaacgagggtaaattcttaccgattgaatcgctttgcagttgtatatgtagtaggcgctaacgataaacgttcaac ggcaacaagacgacgacaccggagagaaaatcgccgacggaactcgaaggggggagattttgaaattagctgggctccgaatgatttgacttgggccttt atattcttatgtttggtatatatatatagaagctcgcctttttttttggtacggctattttattttctatatcatttttgatttataaataaaaaaaagg aggagatagaggaggaaatctatctccttatcctgaccacagaaacaaacataagccaatggaaacaaaaaaattctaaggtgaaaaaagccaatcagaa gctgagtaaactctaagctcacacaaaaATGGCGTCTCTTCTTGGAACATCTTCTTCTGCAATCTGGGCTTCTCCTTCACTCTCTTCTCCTTCCTCAAAA CCTTCCTCCTCCCCCATTTGCTTCAGGCCAGgtaaaccagtctctccaaaccttaaaatcttactgttttttctcaattcgaaatcatggtgaattgaat ttttgtatacagGAAAATTGTTTGGAAGCAAGTTAAATGCAGGAATCCAAATAAGGCCAAAGAAGAACAGGTCTCGTTACCATGTTTCGGTTATGAATGT AGCCACTGAAATCAACTCTACTGAACAAgtaagcattttttg►atgatgttcactgaaagtttcagactttgcttgattttgaagttaggaaca◄tga►t tg◄ttgttggttttttatgtaatggtggttttgggttgtagGTAGTAGGGAAGTTTGATTCAAAGAAGAGTGCGAGACCGGTTTATCCATTTGCAGCTAT AGTAGGGCAAGATGAGATGAAGTTATGTCTTTTGTTGAATGTTATTGATCCAAAGATTGGTGGTGTTATGATTATGGGAGATAGAGGAACTGGAAAATCT ACAACTGTTAGATCATTAGTTGATCTGTTACCTGAGATTAATGTAGTTGCAGGTGACCCGTATAACTCGGATCCGATAGATCCTGAGTTTATGGGTGTTG AAGTAAGAGAGAGAGTTGAGAAAGGAGAGCAAGTTCCTGTTATTGCGACTAAGATTAATATGGTTGATCTTCCTTTGGGTGCAACAGAAGATAGAGTTTG TGGAACCATCGATATCGAAAAGGCTTTGACAGAAGGTGTAAAAGCCTTTGAGCCTGGTTTGTTGGCTAAAGCTAATAGAGGGATTCTTTATGTTGATGAA GTTAATCTCTTGGATGATCATTTGGTTGATGTTCTTTTGGATTCAGCTGCTTCTGGTTGGAATACGGTTGAGAGAGAAGGGATTTCGATTTCTCACCCGG CGAGGTTTATCTTGATCGGTTCAGGAAATCCGGAAGAAGGAGAGCTTAGGCCACAGCTTCTTGATCGGTTTGGTATGCATGCACAAGTAGGGACGGTTAG AGATGCTGATTTACGGGTCAAGATTGTTGAAGAGAGAGCTCGTTTCGATAGTAACCCAAAGGATTTCCGTGACACTTACAAAACCGAGCAGGACAAGCTT CAAGACCAGATTTCAACTGCTAGGGCAAACCTTTCCTCGGTTCAGATTGATAGGGAATTGAAGGTGAAGATCTCTAGAGTTTGTTCAGAGCTCAATGTTG ATGGGTTGAGAGGAGACATAGTGACTAACAGAGCAGCAAAAGCACTTGCAGCTCTCAAAGGAAAAGATCGAGTAACTCCAGATGATGTTGCAACCGTTAT CCCTAACTGCTTAAGGCACCGTCTGAGGAAAGATCCACTGGAATCTATTGATTCAGGAGTTCTAGTTTCCGAGAAGTTCGCCGAGATTTTCAGCTGAata ggagattcgattctgtgatcatttttctttaactttttctactctgtaaacggtgagaagaaccaaaactataaacaggcaaatctgattgaatatagag tctatgctttattcattaagttgagttgttcaaacttcaaatcatagactcaatagaactctgtttatatttgtgtaactacatacaaacattcctgcat tgattatggctataaagctatcagaaaacgttgtcaggatcaactgttactatatcttgaaacgcaggtgataacttattgaTTAGAAGGACATAGCGTT TTGC
Border_1 (99807_LBU)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCMAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTCCTAACTTCAAAATC
AAGCAAAGTCTGAAACTTTCAGTGAACATCATCAAAAAATGCTTACTTGTTCAGTAGAGTTGATTTCAGTGGCTACATTCATAACCGAAACATGGTAACG
AGACCTGTTCTTCTTTGGCCTTATTTGGATTCCTGCATTTAACTTGCTTCCAAACAATTTTCCTGTATACAAAAATTCAATTCACCATGATTTCGAATTG
AGAAAAAACAGTAAGATTTTAAGGKTTGGAGAGACTGGYTTACCTGGCCTGAAGCAAATGGGGGAGGAGGGAAGGTTTTGRGGAAGGAGAAGAGAGYGAA
GGGAGAAGCCCAGATTGCAGAAGAAGATGTTCCAAGAAGAGACGCCATTTTTTGTGTGAGCTTAAGAGTTTACTCAGCTTCTGATTGGCTTTTTTCACCT
TAGAATTTTTTTGTTTCCATTGGCTTATGTTTGGTTCTGTGGTCAGGATAAGGAGATAGATTTCCTCCTCTATCTCCT
| Start of BLAST Alignment: | NT 365 / Intron 2 of 2 |
| First 15 bp Perfect Match: | NT 371 / Intron 2 of 2 |
BLAST Details: Query Sequence: 99807_LBU Length: (678 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g18480 68417.t02581 magnesium-chelatase subunit chlI, ... 2185 3.1e-94 1 At5g45930 68418.t05255 magnesium-chelatase subunit chlI, ... 684 1.5e-25 1 At1g17800 68414.t01966 plastocyanin-like domain-containin... 195 0.66 1 At3g61260 68416.t06335 DNA-binding family protein / remor... 192 0.91 1 >At4g18480 68417.t02581 magnesium-chelatase subunit chlI, chloroplast / Mg-protoporphyrin IX chelatase (CHLI) (CS) (CH42) identical to SP|P161127 Magnesium-chelatase subunit chlI, chloroplast precursor (Mg-protoporphyrin IX chelatase) (Protein CS/CH-42) {Arabidopsis thaliana} Length = 1772 Minus Strand HSPs: Score = 2185 (333.9 bits), Expect = 3.1e-94, P = 3.1e-94 Identities = 447/457 (97%), Positives = 451/457 (98%), Strand = Minus / Plus Query: 632 AAACATAAGCCAATGGAAACAAAAAAATTCTAAGGTGAAAAAAGCCAATCAGAAGCTGAG 573 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 AAACATAAGCCAATGGAAACAAAAAAATTCTAAGGTGAAAAAAGCCAATCAGAAGCTGAG 60 Query: 572 TAAACTCTTAAGCTCACACAAAAAATGGCGTCTCTTCTTGGAACATCTTCTTCTGCAATC 513 |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 61 TAAACTCT-AAGCTCACACAAAAA-TGGCGTCTCTTCTTGGAACATCTTCTTCTGCAATC 118 Query: 512 TGGGCTTCTCCCTTCRCTCTCTTCTCCTTCCYCAAAACCTTCCCTCCTCCCCCATTTGCT 453 ||||||||||| |||+|||||||||||||||+||||||||||| |||||||||||||||| Sbjct: 119 TGGGCTTCTCC-TTCACTCTCTTCTCCTTCCTCAAAACCTTCC-TCCTCCCCCATTTGCT 176 Query: 452 TCAGGCCAGGTAARCCAGTCTCTCCAAMCCTTAAAATCTTACTGTTTTTTCTCAATTCGA 393 |||||||||||||+|||||||||||||+|||||||||||||||||||||||||||||||| Sbjct: 177 TCAGGCCAGGTAAACCAGTCTCTCCAAACCTTAAAATCTTACTGTTTTTTCTCAATTCGA 236 Query: 392 AATCATGGTGAATTGAATTTTTGTATACAGGAAAATTGTTTGGAAGCAAGTTAAATGCAG 333 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 237 AATCATGGTGAATTGAATTTTTGTATACAGGAAAATTGTTTGGAAGCAAGTTAAATGCAG 296 Query: 332 GAATCCAAATAAGGCCAAAGAAGAACAGGTCTCGTTACCATGTTTCGGTTATGAATGTAG 273 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 297 GAATCCAAATAAGGCCAAAGAAGAACAGGTCTCGTTACCATGTTTCGGTTATGAATGTAG 356 Query: 272 CCACTGAAATCAACTCTACTGAACAAGTAAGCATTTTTTGATGATGTTCACTGAAAGTTT 213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 357 CCACTGAAATCAACTCTACTGAACAAGTAAGCATTTTTTGATGATGTTCACTGAAAGTTT 416 Query: 212 CAGACTTTGCTTGATTTTGAAGTTAGGAACAA-ATTG 177 ||||||||||||||||||||||||||||||| |||| Sbjct: 417 CAGACTTTGCTTGATTTTGAAGTTAGGAACATGATTG 453 >At5g45930 68418.t05255 magnesium-chelatase subunit chlI, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative similar to SP|P161127 from Arabidopsis thaliana, SP|P93162 from Glycine max, SP|O22436 from Nicotiana tabacum; non-consensus AA donor splice site at exon 1, TG acceptor splice site at exon 2 Length = 1674 Minus Strand HSPs: Score = 684 (108.7 bits), Expect = 1.5e-25, P = 1.5e-25 Identities = 331/513 (64%), Positives = 334/513 (65%), Strand = Minus / Plus
Border_2 (99807_LB2D)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCMAATCGAATTCA:TTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCCGCAATGTGTTAATTTGTTTCAATGTGTTAT
TTGTTGTTGGTTTTTTATGTAATGGTGGTTTTGGGTTGTAGGTAGTAGGGAAGTTTGATTCAAAGAAGAGTGCGAGACCGGTTTATCCATTTGCAGCTAT
AGTAGGGCAAGATGAGATGAAGTTATGTCTTTTGTTGAATGTTATTGATCCAAAGATTGGTGGTGTTATGATTATGGGAGATAGAGGAACTGGAAAATCT
ACAACTGTTAGATCATTAGTTGATCTGTTACCTGAGATTAATGTAGTTGCAGGTGACCCGTATAACTCGGATCCGATAGATCCTGAGTTTATGGGTGTTG
AAGTAAGAGAGAGAGTTGAGAAAGGAGAGCAAGTTCCTGTTATTGCGACTAAGATTAATATGGTTGATCTTCCTTTGGGTGCAACAGAAGATAGAGTTTG
TGGAACCATCGATATCGAAAAGGCTTTGACAGAAAGGTGTAAAAGCCTTTGAGCCTGG:TTTGTTGGCTAAAGCTAATAGAGGGATTCTTTATGTTGATG
AAGTTAATCTCTTGGATGATCATTTGGTTGATGTTCTTTTGGATTCAGCTGCTTCTGGTTGGAATACGGTTGAAAGAGAAGGGATTTCGATTTCTCACCC
GGCGAGGTTTATCTTGATCGGTTCAGGAAATCCCGAAGAAGGARAGCTTAGGCCACAGCTTCTTGATCGGTTTGGTATGCATGCACAAGTAGGGACGGTT
AGAGATGCTGATTTACGGGTCAAGATTGTTGAAGAGAGAGCTCGTTTCGATAGTAACCCAAAGGATTTCCGTGACACTTACAAAACCGAGCAGGACAAGC
TTCAAGACCAGATTTCAACTGCTAGGGCAAACCTTTCCTCGGTTCAGATTGATAGGGAATTGAAGGTGAAGATCTCTAGAGTTTGTTCAGAGCTCAAATG
TTGATGGGTTGAGAGGAGACATAGTGACTAACAGAGCAGCAAAAGCACTTGCAGCTCTCAAAGGAAAAGATCGAGTAACTCCAGATGATGTTGCAACCGT
TATCCCTAACTGCTTAAGGCACCGTNTGAGGAAAGATCCACTGGAATNTANTGATTCAGGAGTTCTAGTTTCCGAGAAGTTCGCCNAGATTTTCAGNTGA
ATAGGAGATTNGATTCTGTGATCATTTATCTGGTGACCT
| Start of BLAST Alignment: | NT 311 / Intron 2 of 2 |
| First 15 bp Perfect Match: | NT 368 / Intron 2 of 2 |
BLAST Details: Query Sequence: 99807_LB2D Length: (1337 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g18480 68417.t02581 magnesium-chelatase subunit chlI, ... 5548 4.0e-246 1 At5g45930 68418.t05255 magnesium-chelatase subunit chlI, ... 3657 1.1e-160 1 At5g45940 68418.t05256 MutT/nudix family protein contains... 1612 2.6e-68 1 At1g08520 68414.t00841 magnesium-chelatase subunit chlD, ... 433 5.5e-11 1 >At4g18480 68417.t02581 magnesium-chelatase subunit chlI, chloroplast / Mg-protoporphyrin IX chelatase (CHLI) (CS) (CH42) identical to SP|P161127 Magnesium-chelatase subunit chlI, chloroplast precursor (Mg-protoporphyrin IX chelatase) (Protein CS/CH-42) {Arabidopsis thaliana} Length = 1772 Plus Strand HSPs: Score = 5548 (838.5 bits), Expect = 4.0e-246, P = 4.0e-246 Identities = 1149/1186 (96%), Positives = 1150/1186 (96%), Strand = Plus / Plus Query: 151 ATG-TGTT-ATT-AA-GTTGTCCGCAATGTG-TTAATTT-GTTTCAATGTGT-TATTTGT 203 ||| |||| | | || ||| || | | | || || |||| | | | | |||| Sbjct: 397 ATGATGTTCACTGAAAGTT-TCAG-ACTTTGCTTGATTTTGAAGTTAGGAACATGATTGT 454 Query: 204 TGTTGGTTTTTTATGTAATGGTGGTTTTGGGTTGTAGGTAGTAGGGAAGTTTGATTCAAA 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 455 TGTTGGTTTTTTATGTAATGGTGGTTTTGGGTTGTAGGTAGTAGGGAAGTTTGATTCAAA 514 Query: 264 GAAGAGTGCGAGACCGGTTTATCCATTTGCAGCTATAGTAGGGCAAGATGAGATGAAGTT 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 515 GAAGAGTGCGAGACCGGTTTATCCATTTGCAGCTATAGTAGGGCAAGATGAGATGAAGTT 574 Query: 324 ATGTCTTTTGTTGAATGTTATTGATCCAAAGATTGGTGGTGTTATGATTATGGGAGATAG 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 575 ATGTCTTTTGTTGAATGTTATTGATCCAAAGATTGGTGGTGTTATGATTATGGGAGATAG 634 Query: 384 AGGAACTGGAAAATCTACAACTGTTAGATCATTAGTTGATCTGTTACCTGAGATTAATGT 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 635 AGGAACTGGAAAATCTACAACTGTTAGATCATTAGTTGATCTGTTACCTGAGATTAATGT 694 Query: 444 AGTTGCAGGTGACCCGTATAACTCGGATCCGATAGATCCTGAGTTTATGGGTGTTGAAGT 503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 695 AGTTGCAGGTGACCCGTATAACTCGGATCCGATAGATCCTGAGTTTATGGGTGTTGAAGT 754 Query: 504 AAGAGAGAGAGTTGAGAAAGGAGAGCAAGTTCCTGTTATTGCGACTAAGATTAATATGGT 563 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 755 AAGAGAGAGAGTTGAGAAAGGAGAGCAAGTTCCTGTTATTGCGACTAAGATTAATATGGT 814 Query: 564 TGATCTTCCTTTGGGTGCAACAGAAGATAGAGTTTGTGGAACCATCGATATCGAAAAGGC 623 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 815 TGATCTTCCTTTGGGTGCAACAGAAGATAGAGTTTGTGGAACCATCGATATCGAAAAGGC 874 Query: 624 TTTGACAGAAAGGTGTAAAAGCCTTTGAGCCTGGTTTGTTGGCTAAAGCTAATAGAGGGA 683 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 875 TTTGACAGAA-GGTGTAAAAGCCTTTGAGCCTGGTTTGTTGGCTAAAGCTAATAGAGGGA 933 Query: 684 TTCTTTATGTTGATGAAGTTAATCTCTTGGATGATCATTTGGTTGATGTTCTTTTGGATT 743 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 934 TTCTTTATGTTGATGAAGTTAATCTCTTGGATGATCATTTGGTTGATGTTCTTTTGGATT 993 Query: 744 CAGCTGCTTCTGGTTGGAATACGGTTGAAAGAGAAGGGATTTCGATTTCTCACCCGGCGA 803 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 994 CAGCTGCTTCTGGTTGGAATACGGTTGAGAGAGAAGGGATTTCGATTTCTCACCCGGCGA 1053 Query: 804 GGTTTATCTTGATCGGTTCAGGAAATCCCGAAGAAGGARAGCTTAGGCCACAGCTTCTTG 863 |||||||||||||||||||||||||||| |||||||||+||||||||||||||||||||| Sbjct: 1054 GGTTTATCTTGATCGGTTCAGGAAATCCGGAAGAAGGAGAGCTTAGGCCACAGCTTCTTG 1113 Query: 864 ATCGGTTTGGTATGCATGCACAAGTAGGGACGGTTAGAGATGCTGATTTACGGGTCAAGA 923 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1114 ATCGGTTTGGTATGCATGCACAAGTAGGGACGGTTAGAGATGCTGATTTACGGGTCAAGA 1173 Query: 924 TTGTTGAAGAGAGAGCTCGTTTCGATAGTAACCCAAAGGATTTCCGTGACACTTACAAAA 983 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1174 TTGTTGAAGAGAGAGCTCGTTTCGATAGTAACCCAAAGGATTTCCGTGACACTTACAAAA 1233 Query: 984 CCGAGCAGGACAAGCTTCAAGACCAGATTTCAACTGCTAGGGCAAACCTTTCCTCGGTTC 1043 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1234 CCGAGCAGGACAAGCTTCAAGACCAGATTTCAACTGCTAGGGCAAACCTTTCCTCGGTTC 1293 Query: 1044 AGATTGATAGGGAATTGAAGGTGAAGATCTCTAGAGTTTGTTCAGAGCTCAAATGTTGAT 1103 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 1294 AGATTGATAGGGAATTGAAGGTGAAGATCTCTAGAGTTTGTTCAGAGCTCAA-TGTTGAT 1352 Query: 1104 GGGTTGAGAGGAGACATAGTGACTAACAGAGCAGCAAAAGCACTTGCAGCTCTCAAAGGA 1163 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1353 GGGTTGAGAGGAGACATAGTGACTAACAGAGCAGCAAAAGCACTTGCAGCTCTCAAAGGA 1412 Query: 1164 AAAGATCGAGTAACTCCAGATGATGTTGCAACCGTTATCCCTAACTGCTTAAGGCACCGT 1223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1413 AAAGATCGAGTAACTCCAGATGATGTTGCAACCGTTATCCCTAACTGCTTAAGGCACCGT 1472 Query: 1224 NTGAGGAAAGATCCACTGGAATNTANTGATTCAGGAGTTCTAGTTTCCGAGAAGTTCGCC 1283 ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 1473 CTGAGGAAAGATCCACTGGAATCTATTGATTCAGGAGTTCTAGTTTCCGAGAAGTTCGCC 1532 Query: 1284 NAGATTTTCAGNTGAATAGGAGATTNGATTCTGTGATCATTTATCT 1329 |||||||||| ||||||||||||| |||||||||||||||| ||| Sbjct: 1533 GAGATTTTCAGCTGAATAGGAGATTCGATTCTGTGATCATTTTTCT 1578 >At5g45930 68418.t05255 magnesium-chelatase subunit chlI, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative similar to SP|P161127 from Arabidopsis thaliana, SP|P93162 from Glycine max, SP|O22436 from Nicotiana tabacum; non-consensus AA donor splice site at exon 1, TG acceptor splice site at exon 2 Length = 1674 Plus Strand HSPs: Score = 3657 (554.7 bits), Expect = 1.1e-160, P = 1.1e-160 Identities = 950/1193 (79%), Positives = 951/1193 (79%), Strand = Plus / Plus