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At4g18480 SYNGENTA 99807

Genomic Sequence (from TAIR)
gtgagattctactcaatcgacgagcaacgagggtaaattcttaccgattgaatcgctttgcagttgtatatgtagtaggcgctaacgataaacgttcaac
ggcaacaagacgacgacaccggagagaaaatcgccgacggaactcgaaggggggagattttgaaattagctgggctccgaatgatttgacttgggccttt
atattcttatgtttggtatatatatatagaagctcgcctttttttttggtacggctattttattttctatatcatttttgatttataaataaaaaaaagg
aggagatagaggaggaaatctatctccttatcctgaccacagaaacaaacataagccaatggaaacaaaaaaattctaaggtgaaaaaagccaatcagaa
gctgagtaaactctaagctcacacaaaaATGGCGTCTCTTCTTGGAACATCTTCTTCTGCAATCTGGGCTTCTCCTTCACTCTCTTCTCCTTCCTCAAAA
CCTTCCTCCTCCCCCATTTGCTTCAGGCCAGgtaaaccagtctctccaaaccttaaaatcttactgttttttctcaattcgaaatcatggtgaattgaat
ttttgtatacagGAAAATTGTTTGGAAGCAAGTTAAATGCAGGAATCCAAATAAGGCCAAAGAAGAACAGGTCTCGTTACCATGTTTCGGTTATGAATGT
AGCCACTGAAATCAACTCTACTGAACAAgtaagcattttttgatgatgttcactgaaagtttcagactttgcttgattttgaagttaggaacatgat
tgttgttggttttttatgtaatggtggttttgggttgtagGTAGTAGGGAAGTTTGATTCAAAGAAGAGTGCGAGACCGGTTTATCCATTTGCAGCTAT
AGTAGGGCAAGATGAGATGAAGTTATGTCTTTTGTTGAATGTTATTGATCCAAAGATTGGTGGTGTTATGATTATGGGAGATAGAGGAACTGGAAAATCT
ACAACTGTTAGATCATTAGTTGATCTGTTACCTGAGATTAATGTAGTTGCAGGTGACCCGTATAACTCGGATCCGATAGATCCTGAGTTTATGGGTGTTG
AAGTAAGAGAGAGAGTTGAGAAAGGAGAGCAAGTTCCTGTTATTGCGACTAAGATTAATATGGTTGATCTTCCTTTGGGTGCAACAGAAGATAGAGTTTG
TGGAACCATCGATATCGAAAAGGCTTTGACAGAAGGTGTAAAAGCCTTTGAGCCTGGTTTGTTGGCTAAAGCTAATAGAGGGATTCTTTATGTTGATGAA
GTTAATCTCTTGGATGATCATTTGGTTGATGTTCTTTTGGATTCAGCTGCTTCTGGTTGGAATACGGTTGAGAGAGAAGGGATTTCGATTTCTCACCCGG
CGAGGTTTATCTTGATCGGTTCAGGAAATCCGGAAGAAGGAGAGCTTAGGCCACAGCTTCTTGATCGGTTTGGTATGCATGCACAAGTAGGGACGGTTAG
AGATGCTGATTTACGGGTCAAGATTGTTGAAGAGAGAGCTCGTTTCGATAGTAACCCAAAGGATTTCCGTGACACTTACAAAACCGAGCAGGACAAGCTT
CAAGACCAGATTTCAACTGCTAGGGCAAACCTTTCCTCGGTTCAGATTGATAGGGAATTGAAGGTGAAGATCTCTAGAGTTTGTTCAGAGCTCAATGTTG
ATGGGTTGAGAGGAGACATAGTGACTAACAGAGCAGCAAAAGCACTTGCAGCTCTCAAAGGAAAAGATCGAGTAACTCCAGATGATGTTGCAACCGTTAT
CCCTAACTGCTTAAGGCACCGTCTGAGGAAAGATCCACTGGAATCTATTGATTCAGGAGTTCTAGTTTCCGAGAAGTTCGCCGAGATTTTCAGCTGAata
ggagattcgattctgtgatcatttttctttaactttttctactctgtaaacggtgagaagaaccaaaactataaacaggcaaatctgattgaatatagag
tctatgctttattcattaagttgagttgttcaaacttcaaatcatagactcaatagaactctgtttatatttgtgtaactacatacaaacattcctgcat
tgattatggctataaagctatcagaaaacgttgtcaggatcaactgttactatatcttgaaacgcaggtgataacttattgaTTAGAAGGACATAGCGTT
TTGC

Border_1 (99807_LBU)

GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCMAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTCCTAACTTCAAAATC
AAGCAAAGTCTGAAACTTTCAGTGAACATCATCAAAAAATGCTTACTTGTTCAGTAGAGTTGATTTCAGTGGCTACATTCATAACCGAAACATGGTAACG
AGACCTGTTCTTCTTTGGCCTTATTTGGATTCCTGCATTTAACTTGCTTCCAAACAATTTTCCTGTATACAAAAATTCAATTCACCATGATTTCGAATTG
AGAAAAAACAGTAAGATTTTAAGGKTTGGAGAGACTGGYTTACCTGGCCTGAAGCAAATGGGGGAGGAGGGAAGGTTTTGRGGAAGGAGAAGAGAGYGAA
GGGAGAAGCCCAGATTGCAGAAGAAGATGTTCCAAGAAGAGACGCCATTTTTTGTGTGAGCTTAAGAGTTTACTCAGCTTCTGATTGGCTTTTTTCACCT
TAGAATTTTTTTGTTTCCATTGGCTTATGTTTGGTTCTGTGGTCAGGATAAGGAGATAGATTTCCTCCTCTATCTCCT

Start of BLAST Alignment:NT 365 / Intron 2 of 2
First 15 bp Perfect Match:NT 371 / Intron 2 of 2
BLAST Details:
Query Sequence: 99807_LBU 
Length: (678 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At4g18480 68417.t02581 magnesium-chelatase subunit chlI, ...  2185  3.1e-94   1
At5g45930 68418.t05255 magnesium-chelatase subunit chlI, ...   684  1.5e-25   1
At1g17800 68414.t01966 plastocyanin-like domain-containin...   195  0.66      1
At3g61260 68416.t06335 DNA-binding family protein / remor...   192  0.91      1


>At4g18480 68417.t02581 magnesium-chelatase subunit chlI, chloroplast /
           Mg-protoporphyrin IX chelatase (CHLI) (CS) (CH42) identical to
           SP|P161127 Magnesium-chelatase subunit chlI, chloroplast precursor
           (Mg-protoporphyrin IX chelatase) (Protein CS/CH-42) {Arabidopsis
           thaliana}
        Length = 1772

  Minus Strand HSPs:

 Score = 2185 (333.9 bits), Expect = 3.1e-94, P = 3.1e-94
 Identities = 447/457 (97%), Positives = 451/457 (98%), Strand = Minus / Plus

Query:   632 AAACATAAGCCAATGGAAACAAAAAAATTCTAAGGTGAAAAAAGCCAATCAGAAGCTGAG 573
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:     1 AAACATAAGCCAATGGAAACAAAAAAATTCTAAGGTGAAAAAAGCCAATCAGAAGCTGAG 60

Query:   572 TAAACTCTTAAGCTCACACAAAAAATGGCGTCTCTTCTTGGAACATCTTCTTCTGCAATC 513
             |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct:    61 TAAACTCT-AAGCTCACACAAAAA-TGGCGTCTCTTCTTGGAACATCTTCTTCTGCAATC 118

Query:   512 TGGGCTTCTCCCTTCRCTCTCTTCTCCTTCCYCAAAACCTTCCCTCCTCCCCCATTTGCT 453
             ||||||||||| |||+|||||||||||||||+||||||||||| ||||||||||||||||
Sbjct:   119 TGGGCTTCTCC-TTCACTCTCTTCTCCTTCCTCAAAACCTTCC-TCCTCCCCCATTTGCT 176

Query:   452 TCAGGCCAGGTAARCCAGTCTCTCCAAMCCTTAAAATCTTACTGTTTTTTCTCAATTCGA 393
             |||||||||||||+|||||||||||||+||||||||||||||||||||||||||||||||
Sbjct:   177 TCAGGCCAGGTAAACCAGTCTCTCCAAACCTTAAAATCTTACTGTTTTTTCTCAATTCGA 236

Query:   392 AATCATGGTGAATTGAATTTTTGTATACAGGAAAATTGTTTGGAAGCAAGTTAAATGCAG 333
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   237 AATCATGGTGAATTGAATTTTTGTATACAGGAAAATTGTTTGGAAGCAAGTTAAATGCAG 296

Query:   332 GAATCCAAATAAGGCCAAAGAAGAACAGGTCTCGTTACCATGTTTCGGTTATGAATGTAG 273
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   297 GAATCCAAATAAGGCCAAAGAAGAACAGGTCTCGTTACCATGTTTCGGTTATGAATGTAG 356

Query:   272 CCACTGAAATCAACTCTACTGAACAAGTAAGCATTTTTTGATGATGTTCACTGAAAGTTT 213
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   357 CCACTGAAATCAACTCTACTGAACAAGTAAGCATTTTTTGATGATGTTCACTGAAAGTTT 416

Query:   212 CAGACTTTGCTTGATTTTGAAGTTAGGAACAA-ATTG 177
             |||||||||||||||||||||||||||||||  ||||
Sbjct:   417 CAGACTTTGCTTGATTTTGAAGTTAGGAACATGATTG 453


>At5g45930 68418.t05255 magnesium-chelatase subunit chlI, chloroplast, putative
           / Mg-protoporphyrin IX chelatase, putative similar to SP|P161127
           from Arabidopsis thaliana, SP|P93162 from Glycine max, SP|O22436
           from Nicotiana tabacum; non-consensus AA donor splice site at exon
           1, TG acceptor splice site at exon 2
        Length = 1674

  Minus Strand HSPs:

 Score = 684 (108.7 bits), Expect = 1.5e-25, P = 1.5e-25
 Identities = 331/513 (64%), Positives = 334/513 (65%), Strand = Minus / Plus


Border_2 (99807_LB2D)

GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCMAATCGAATTCA:TTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCCGCAATGTGTTAATTTGTTTCAATGTGTTAT
TTGTTGTTGGTTTTTTATGTAATGGTGGTTTTGGGTTGTAGGTAGTAGGGAAGTTTGATTCAAAGAAGAGTGCGAGACCGGTTTATCCATTTGCAGCTAT
AGTAGGGCAAGATGAGATGAAGTTATGTCTTTTGTTGAATGTTATTGATCCAAAGATTGGTGGTGTTATGATTATGGGAGATAGAGGAACTGGAAAATCT
ACAACTGTTAGATCATTAGTTGATCTGTTACCTGAGATTAATGTAGTTGCAGGTGACCCGTATAACTCGGATCCGATAGATCCTGAGTTTATGGGTGTTG
AAGTAAGAGAGAGAGTTGAGAAAGGAGAGCAAGTTCCTGTTATTGCGACTAAGATTAATATGGTTGATCTTCCTTTGGGTGCAACAGAAGATAGAGTTTG
TGGAACCATCGATATCGAAAAGGCTTTGACAGAAAGGTGTAAAAGCCTTTGAGCCTGG:TTTGTTGGCTAAAGCTAATAGAGGGATTCTTTATGTTGATG
AAGTTAATCTCTTGGATGATCATTTGGTTGATGTTCTTTTGGATTCAGCTGCTTCTGGTTGGAATACGGTTGAAAGAGAAGGGATTTCGATTTCTCACCC
GGCGAGGTTTATCTTGATCGGTTCAGGAAATCCCGAAGAAGGARAGCTTAGGCCACAGCTTCTTGATCGGTTTGGTATGCATGCACAAGTAGGGACGGTT
AGAGATGCTGATTTACGGGTCAAGATTGTTGAAGAGAGAGCTCGTTTCGATAGTAACCCAAAGGATTTCCGTGACACTTACAAAACCGAGCAGGACAAGC
TTCAAGACCAGATTTCAACTGCTAGGGCAAACCTTTCCTCGGTTCAGATTGATAGGGAATTGAAGGTGAAGATCTCTAGAGTTTGTTCAGAGCTCAAATG
TTGATGGGTTGAGAGGAGACATAGTGACTAACAGAGCAGCAAAAGCACTTGCAGCTCTCAAAGGAAAAGATCGAGTAACTCCAGATGATGTTGCAACCGT
TATCCCTAACTGCTTAAGGCACCGTNTGAGGAAAGATCCACTGGAATNTANTGATTCAGGAGTTCTAGTTTCCGAGAAGTTCGCCNAGATTTTCAGNTGA
ATAGGAGATTNGATTCTGTGATCATTTATCTGGTGACCT

Start of BLAST Alignment:NT 311 / Intron 2 of 2
First 15 bp Perfect Match:NT 368 / Intron 2 of 2
BLAST Details:
Query Sequence: 99807_LB2D 
Length: (1337 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At4g18480 68417.t02581 magnesium-chelatase subunit chlI, ...  5548  4.0e-246  1
At5g45930 68418.t05255 magnesium-chelatase subunit chlI, ...  3657  1.1e-160  1
At5g45940 68418.t05256 MutT/nudix family protein contains...  1612  2.6e-68   1
At1g08520 68414.t00841 magnesium-chelatase subunit chlD, ...   433  5.5e-11   1


>At4g18480 68417.t02581 magnesium-chelatase subunit chlI, chloroplast /
           Mg-protoporphyrin IX chelatase (CHLI) (CS) (CH42) identical to
           SP|P161127 Magnesium-chelatase subunit chlI, chloroplast precursor
           (Mg-protoporphyrin IX chelatase) (Protein CS/CH-42) {Arabidopsis
           thaliana}
        Length = 1772

  Plus Strand HSPs:

 Score = 5548 (838.5 bits), Expect = 4.0e-246, P = 4.0e-246
 Identities = 1149/1186 (96%), Positives = 1150/1186 (96%), Strand = Plus / Plus

Query:   151 ATG-TGTT-ATT-AA-GTTGTCCGCAATGTG-TTAATTT-GTTTCAATGTGT-TATTTGT 203
             ||| |||| | | || ||| || | | | || || |||| |     | |    |  ||||
Sbjct:   397 ATGATGTTCACTGAAAGTT-TCAG-ACTTTGCTTGATTTTGAAGTTAGGAACATGATTGT 454

Query:   204 TGTTGGTTTTTTATGTAATGGTGGTTTTGGGTTGTAGGTAGTAGGGAAGTTTGATTCAAA 263
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   455 TGTTGGTTTTTTATGTAATGGTGGTTTTGGGTTGTAGGTAGTAGGGAAGTTTGATTCAAA 514

Query:   264 GAAGAGTGCGAGACCGGTTTATCCATTTGCAGCTATAGTAGGGCAAGATGAGATGAAGTT 323
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   515 GAAGAGTGCGAGACCGGTTTATCCATTTGCAGCTATAGTAGGGCAAGATGAGATGAAGTT 574

Query:   324 ATGTCTTTTGTTGAATGTTATTGATCCAAAGATTGGTGGTGTTATGATTATGGGAGATAG 383
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   575 ATGTCTTTTGTTGAATGTTATTGATCCAAAGATTGGTGGTGTTATGATTATGGGAGATAG 634

Query:   384 AGGAACTGGAAAATCTACAACTGTTAGATCATTAGTTGATCTGTTACCTGAGATTAATGT 443
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   635 AGGAACTGGAAAATCTACAACTGTTAGATCATTAGTTGATCTGTTACCTGAGATTAATGT 694

Query:   444 AGTTGCAGGTGACCCGTATAACTCGGATCCGATAGATCCTGAGTTTATGGGTGTTGAAGT 503
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   695 AGTTGCAGGTGACCCGTATAACTCGGATCCGATAGATCCTGAGTTTATGGGTGTTGAAGT 754

Query:   504 AAGAGAGAGAGTTGAGAAAGGAGAGCAAGTTCCTGTTATTGCGACTAAGATTAATATGGT 563
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   755 AAGAGAGAGAGTTGAGAAAGGAGAGCAAGTTCCTGTTATTGCGACTAAGATTAATATGGT 814

Query:   564 TGATCTTCCTTTGGGTGCAACAGAAGATAGAGTTTGTGGAACCATCGATATCGAAAAGGC 623
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   815 TGATCTTCCTTTGGGTGCAACAGAAGATAGAGTTTGTGGAACCATCGATATCGAAAAGGC 874

Query:   624 TTTGACAGAAAGGTGTAAAAGCCTTTGAGCCTGGTTTGTTGGCTAAAGCTAATAGAGGGA 683
             |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   875 TTTGACAGAA-GGTGTAAAAGCCTTTGAGCCTGGTTTGTTGGCTAAAGCTAATAGAGGGA 933

Query:   684 TTCTTTATGTTGATGAAGTTAATCTCTTGGATGATCATTTGGTTGATGTTCTTTTGGATT 743
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   934 TTCTTTATGTTGATGAAGTTAATCTCTTGGATGATCATTTGGTTGATGTTCTTTTGGATT 993

Query:   744 CAGCTGCTTCTGGTTGGAATACGGTTGAAAGAGAAGGGATTTCGATTTCTCACCCGGCGA 803
             |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct:   994 CAGCTGCTTCTGGTTGGAATACGGTTGAGAGAGAAGGGATTTCGATTTCTCACCCGGCGA 1053

Query:   804 GGTTTATCTTGATCGGTTCAGGAAATCCCGAAGAAGGARAGCTTAGGCCACAGCTTCTTG 863
             |||||||||||||||||||||||||||| |||||||||+|||||||||||||||||||||
Sbjct:  1054 GGTTTATCTTGATCGGTTCAGGAAATCCGGAAGAAGGAGAGCTTAGGCCACAGCTTCTTG 1113

Query:   864 ATCGGTTTGGTATGCATGCACAAGTAGGGACGGTTAGAGATGCTGATTTACGGGTCAAGA 923
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1114 ATCGGTTTGGTATGCATGCACAAGTAGGGACGGTTAGAGATGCTGATTTACGGGTCAAGA 1173

Query:   924 TTGTTGAAGAGAGAGCTCGTTTCGATAGTAACCCAAAGGATTTCCGTGACACTTACAAAA 983
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1174 TTGTTGAAGAGAGAGCTCGTTTCGATAGTAACCCAAAGGATTTCCGTGACACTTACAAAA 1233

Query:   984 CCGAGCAGGACAAGCTTCAAGACCAGATTTCAACTGCTAGGGCAAACCTTTCCTCGGTTC 1043
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1234 CCGAGCAGGACAAGCTTCAAGACCAGATTTCAACTGCTAGGGCAAACCTTTCCTCGGTTC 1293

Query:  1044 AGATTGATAGGGAATTGAAGGTGAAGATCTCTAGAGTTTGTTCAGAGCTCAAATGTTGAT 1103
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct:  1294 AGATTGATAGGGAATTGAAGGTGAAGATCTCTAGAGTTTGTTCAGAGCTCAA-TGTTGAT 1352

Query:  1104 GGGTTGAGAGGAGACATAGTGACTAACAGAGCAGCAAAAGCACTTGCAGCTCTCAAAGGA 1163
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1353 GGGTTGAGAGGAGACATAGTGACTAACAGAGCAGCAAAAGCACTTGCAGCTCTCAAAGGA 1412

Query:  1164 AAAGATCGAGTAACTCCAGATGATGTTGCAACCGTTATCCCTAACTGCTTAAGGCACCGT 1223
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1413 AAAGATCGAGTAACTCCAGATGATGTTGCAACCGTTATCCCTAACTGCTTAAGGCACCGT 1472

Query:  1224 NTGAGGAAAGATCCACTGGAATNTANTGATTCAGGAGTTCTAGTTTCCGAGAAGTTCGCC 1283
              ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct:  1473 CTGAGGAAAGATCCACTGGAATCTATTGATTCAGGAGTTCTAGTTTCCGAGAAGTTCGCC 1532

Query:  1284 NAGATTTTCAGNTGAATAGGAGATTNGATTCTGTGATCATTTATCT 1329
              |||||||||| ||||||||||||| |||||||||||||||| |||
Sbjct:  1533 GAGATTTTCAGCTGAATAGGAGATTCGATTCTGTGATCATTTTTCT 1578


>At5g45930 68418.t05255 magnesium-chelatase subunit chlI, chloroplast, putative
           / Mg-protoporphyrin IX chelatase, putative similar to SP|P161127
           from Arabidopsis thaliana, SP|P93162 from Glycine max, SP|O22436
           from Nicotiana tabacum; non-consensus AA donor splice site at exon
           1, TG acceptor splice site at exon 2
        Length = 1674

  Plus Strand HSPs:

 Score = 3657 (554.7 bits), Expect = 1.1e-160, P = 1.1e-160
 Identities = 950/1193 (79%), Positives = 951/1193 (79%), Strand = Plus / Plus