OSU Syngenta vbi

SeedGenes Profile: AtPARN

Gene Information
Gene Symbol AtPARN
Chromosome Locus At1g55870   tair
Alleles in Database 3   See List OR Show All
Identity Confidence Confirmed
Alias Symbol AHG 2 (T. Hirayama) Sequence Identity
Gene Class Embryo Defective
Predicted Function CAF1 Family Ribonuclease
Function Details Poly (A) ribonuclease
Gene Evidence
Border Recovery
Green, Belostotsky (3 alleles)
Database Release September, 2004
Predicted Sequences
Gene:2817 nucleotides
mRNA: 2190 nucleotides
Protein:  584 amino acids
cDNA Status FLcDNA Available: AB194966
Top BLAST Hits
Arabidopsis: Only self hit
Plant ESTs: Vitis vinifera (57%)
Model Genomes:   None
Subcellular Localization TargetP Targeted to Mitochondria
SUBA
mRNA Expression Data NASCArray Spot History for 260593_at
    
Mutant Information
Allele Symbol atparn 1-1atparn 1-2atparn 1-3
Mutant Class Embryo DefectiveEmbryo DefectiveEmbryo Defective
Source of Mutant Green, Belostotsky / MadisonGreen, Belostotsky / MadisonGreen, Belostotsky / Madison
Mutant Line Number    
Ecotype WassilewskijaWassilewskijaWassilewskija
Genetic Background    
ABRC Stock    
Mutagen Treatment T-DNAT-DNAT-DNA
Insertion Mutant Yes   DetailsYes   DetailsYes   Details
Flanking Sequence    
Location of Mutation Exon 3Exon 3Intron 1
Terminal Phenotype Not AvailableNot AvailableNot Available
Nomarski Phenotype
Allelism Evidence Reference AlleleSequence IdentitySequence Identity
Database Release September, 2004September, 2004September, 2004
Seed Color    
Embryo Color    
Percent Mutant Seeds    
Chi - Square    
Seeds Counted    
Percent Top Half    
Chi - Square    
Average Seed Length    
Average Embryo Length