OSU Syngenta vbi

SeedGenes Profile: CIA 5

Gene Information
Gene Symbol CIA 5
Chromosome Locus At2g15290   tair
Alleles in Database 3   See List OR Show All
Identity Confidence Confirmed
Alias Symbol TIC 21 (H.M. Li) Alternate Name
Gene Class Seed Pigment
Predicted Function Chloroplast Import Protein
Function Details None
Gene Evidence
Sequenced Mutant Allele
H.M. Li (1 allele)
Molecular Complementation
H.M. Li (1 allele)
Border Recovery
Li / SAIL (1 allele)
Border Recovery
Li / Salk (1 allele)
Database Release December, 2010
Predicted Sequences
Gene:1738 nucleotides
mRNA: 1129 nucleotides
Protein:  296 amino acids
cDNA Status FLcDNA Available: AY057510
Top BLAST Hits
Arabidopsis: Only self hit
Plant ESTs: Brassica napus (87%)
Model Genomes:   None
Subcellular Localization TargetP Targeted to Chloroplasts
SUBA
mRNA Expression Data NASCArray Spot History for 263298_at
    
Mutant Information
Allele Symbol cia 5-1cia 5-2cia 5-3
Mutant Class Seed PigmentSeed PigmentSeed Pigment
Source of Mutant HM. LiLi / SAILMyouga / Salk
Mutant Line Number  SAIL_278_B02SALK_104852
Ecotype ColumbiaColumbiaColumbia
Genetic Background    
ABRC Stock    
Mutagen Treatment EMST-DNAT-DNA
Insertion Mutant NoYes   DetailsYes   Details
Flanking Sequence    
Location of Mutation Exon 3Exon 2Exon 1
Terminal Phenotype Pigment DefectivePigment DefectivePigment Defective
Nomarski Phenotype
Allelism Evidence Reference AlleleSequence IdentitySequence Identity
Database Release December, 2010December, 2010December, 2010
Seed Color    
Embryo Color    
Percent Mutant Seeds   24.0 %
Chi - Square   0.4
Seeds Counted   643
Percent Top Half    
Chi - Square    
Average Seed Length    
Average Embryo Length