OSU Syngenta vbi

SeedGenes Profile: DCAF 1

Gene Information
Gene Symbol DCAF 1
Chromosome Locus At4g31160   tair
Alleles in Database 2   See List OR Show All
Identity Confidence Confirmed
Alias Symbol  
Gene Class Embryo Defective
Predicted Function Nuclear Ubiquitin E3 Ligase
Function Details Protein degradation
Gene Evidence
Molecular Complementation
X.W. Deng (1 allele)
Border Recovery
Deng / Salk (2 alleles)
Database Release December, 2010
Predicted Sequences
Gene:7223 nucleotides
mRNA: 5871 nucleotides
Protein:  1883 amino acids
cDNA Status EST Identified
Top BLAST Hits
Arabidopsis: Only self hit
Plant ESTs: Rice (Oryza sativa) (48%)
Model Genomes:  Homo sapiens (37%)
Subcellular Localization TargetP Not Targeted to Cell Compartment
SUBA
mRNA Expression Data NASCArray Spot History for 253560_at
    
Mutant Information
Allele Symbol dcaf 1-1dcaf 1-2
Mutant Class Embryo DefectiveEmbryo Defective
Source of Mutant Deng / SalkDeng / Salk
Mutant Line Number SALK_010755SALK_114078
Ecotype ColumbiaColumbia
Genetic Background   
ABRC Stock   
Mutagen Treatment T-DNAT-DNA
Insertion Mutant Yes   DetailsYes   Details
Flanking Sequence   
Location of Mutation Exon 3Exon 12
Terminal Phenotype GlobularGlobular
Nomarski Phenotype
Allelism Evidence Reference AlleleSequence Identity
Database Release December, 2010December, 2010
Seed Color   
Embryo Color   
Percent Mutant Seeds   
Chi - Square   
Seeds Counted   
Percent Top Half   
Chi - Square   
Average Seed Length   
Average Embryo Length