OSU Syngenta vbi

SeedGenes Profile: EMB 3140

Gene Information
Gene Symbol EMB 3140
Chromosome Locus At5g39980   tair
Alleles in Database 3   See List OR Show All
Identity Confidence Confirmed
Alias Symbol  
Gene Class Embryo Defective
Predicted Function PPR Protein
Function Details Processing of organellar mRNAs
Gene Evidence
Border Recovery
Myouga / Riken (1 allele)
Border Recovery
Meinke / SAIL (1 allele)
Border Recovery
Meinke / Salk (1 allele)
Database Release December, 2010
Predicted Sequences
Gene:2361 nucleotides
mRNA: 2361 nucleotides
Protein:  678 amino acids
cDNA Status EST Identified
Top BLAST Hits
Arabidopsis: Only self hit
Plant ESTs: Medicago truncatula (71%)
Model Genomes:   None
Subcellular Localization TargetP Targeted to Chloroplasts
mRNA Expression Data NASCArray Spot History for 249436_at
Mutant Information
Allele Symbol emb 3140-1emb 3140-2emb 3140-3
Mutant Class Embryo DefectiveEmbryo DefectiveEmbryo Defective
Source of Mutant Myouga / RikenMeinke / SAILMeinke / Salk
Mutant Line Number RATM11-2393-1SAIL_14_A10SALK_129401
Ecotype NossenColumbiaColumbia
Genetic Background    
ABRC Stock    
Mutagen Treatment TransposonT-DNAT-DNA
Insertion Mutant Yes   DetailsYes   DetailsYes   Details
Flanking Sequence    
Location of Mutation Exon 1Exon 15' UTR
Terminal Phenotype PreglobularCotyledonCotyledon
Nomarski Phenotype
Allelism Evidence Reference AlleleComplementation Test; Sequence IdentityComplementation Test; Sequence Identity
Database Release December, 2010December, 2010December, 2010
Seed Color    
Embryo Color    
Percent Mutant Seeds 24.5 %24.0 %25.9 %
Chi - Square
Seeds Counted 1067679690
Percent Top Half    
Chi - Square    
Average Seed Length    
Average Embryo Length