OSU Syngenta vbi

SeedGenes Profile: ISPF

Gene Information
Gene Symbol ISPF
Chromosome Locus At1g63970   tair
Alleles in Database 2   See List OR Show All
Identity Confidence Confirmed
Alias Symbol  
Gene Class Seed Pigment
Predicted Function Isoprenoid Biosynthesis
Function Details Plastid MEP pathway
Gene Evidence
Border Recovery
Goodman / Salk (1 allele)
Border Recovery
Meinke / Riken (1 allele)
Database Release December, 2010
Predicted Sequences
Gene:1674 nucleotides
mRNA: 956 nucleotides
Protein:  231 amino acids
cDNA Status FLcDNA Available: BX818620
Top BLAST Hits
Arabidopsis: Only self hit
Plant ESTs: Brassica napus (82%)
Model Genomes:  Synechocystis (44%)
Subcellular Localization TargetP Targeted to Chloroplasts
SUBA
mRNA Expression Data NASCArray Spot History for 260324_at
    
Mutant Information
Allele Symbol ispf-1ispf-2
Mutant Class Seed PigmentSeed Pigment
Source of Mutant Myouga / SalkMyouga / Riken
Mutant Line Number SALK_002470RATM12-2658-1
Ecotype ColumbiaNossen
Genetic Background   
ABRC Stock   
Mutagen Treatment T-DNATransposon
Insertion Mutant Yes   DetailsYes   Details
Flanking Sequence   
Location of Mutation Exon 1 
Terminal Phenotype Pigment DefectivePigment Defective
Nomarski Phenotype
Allelism Evidence Reference AlleleSequence Identity
Database Release December, 2010December, 2010
Seed Color   
Embryo Color   
Percent Mutant Seeds 21.6 %24.3 %
Chi - Square 4.10.1
Seeds Counted 626571
Percent Top Half   
Chi - Square   
Average Seed Length   
Average Embryo Length