Aug 17, 2018 4:41 PM
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Database Query
SeedGenes Profile: ISPF
Gene Information
Gene Symbol
ISPF
Chromosome Locus
At1g63970
Alleles in Database
2
See List
OR
Show All
Identity Confidence
Confirmed
Alias Symbol
Gene Class
Seed Pigment
Predicted Function
Isoprenoid Biosynthesis
Function Details
Plastid MEP pathway
Gene Evidence
Border Recovery
Goodman / Salk (1 allele)
Border Recovery
Meinke / Riken (1 allele)
Database Release
December, 2010
Predicted Sequences
Gene:
1674 nucleotides
mRNA:
956 nucleotides
Protein:
231 amino acids
cDNA Status
FLcDNA Available:
BX818620
Top BLAST Hits
Arabidopsis
:
Only self hit
Plant ESTs:
Brassica napus (82%)
Model Genomes:
Synechocystis (44%)
Subcellular Localization
TargetP
Targeted to Chloroplasts
SUBA
mRNA Expression Data
NASCArray Spot History for
260324_at
Mutant Information
Allele Symbol
ispf-1
ispf-2
Mutant Class
Seed Pigment
Seed Pigment
Source of Mutant
Myouga / Salk
Myouga / Riken
Mutant Line Number
SALK_002470
RATM12-2658-1
Ecotype
Columbia
Nossen
Genetic Background
ABRC Stock
Mutagen Treatment
T-DNA
Transposon
Insertion Mutant
Yes
Details
Yes
Details
Flanking Sequence
Location of Mutation
Exon 1
Terminal Phenotype
Pigment Defective
Pigment Defective
Nomarski Phenotype
Allelism Evidence
Reference Allele
Sequence Identity
Database Release
December, 2010
December, 2010
Seed Color
Embryo Color
Percent Mutant Seeds
21.6 %
24.3 %
Chi - Square
4.1
0.1
Seeds Counted
626
571
Percent Top Half
Chi - Square
Average Seed Length
Average Embryo Length