SeedGenes Profile: PETC

Gene Information Gene Symbol PETC Chromosome Locus At4g03280   Alleles in Database 4   See List OR Show All Identity Confidence Confirmed Alias Symbol PGR 1 (T. Shikanai) Sequence Identity Gene Class Seed Pigment Predicted Function Rieske Subunit of Cytochrome b6f Complex Function Details Photosynthetic electron transfer Gene Evidence Border Recovery Leister / Weisshaar (1 allele) Border Recovery Leister / CSHL (1 allele) Border Recovery Leister / Salk (1 allele) Border Recovery Meinke / Riken (1 allele) Database Release December, 2010 Predicted Sequences Gene: 2145 nucleotides mRNA: 1004 nucleotides Protein:   229 amino acids cDNA Status FLcDNA Available: AF410296 Top BLAST Hits Arabidopsis: Only self hit Plant ESTs: Brassica napus (89%) Model Genomes:   Synechocystis (57%) Subcellular Localization TargetP Targeted to Chloroplasts SUBA mRNA Expression Data NASCArray Spot History for 255435_at

Mutant Information Allele Symbol petc-1 petc-2 petc-3 petc-4 Mutant Class Seed Pigment Seed Pigment Seed Pigment Seed Pigment Source of Mutant Leister / Weisshaar Leister / CSHL Leister / Salk Myouga / Riken Mutant Line Number   CSHL_GT1802   RATM12-0636-1 Ecotype Columbia Landsberg erecta Columbia Nossen Genetic Background         ABRC Stock         Mutagen Treatment Transposon Transposon T-DNA Transposon Insertion Mutant Yes   Details Yes   Details Yes   Details Yes   Details Flanking Sequence         Location of Mutation Intron 4 Upstream Upstream   Terminal Phenotype Pigment Defective Pigment Defective Pigment Defective Pigment Defective Nomarski Phenotype Allelism Evidence Reference Allele Complementation Test; Sequence Identity Complementation Test; Sequence Identity Sequence Identity Database Release December, 2010 December, 2010 December, 2010 December, 2010 Seed Color         Embryo Color         Percent Mutant Seeds       26.5 % Chi - Square       0.7 Seeds Counted       622 Percent Top Half         Chi - Square         Average Seed Length         Average Embryo Length