Aug 17, 2018 4:32 PM
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Database Query
SeedGenes Profile: CLA
Gene Information
Gene Symbol
CLA
Chromosome Locus
At4g15560
Alleles in Database
2
See List
OR
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Identity Confidence
Confirmed
Alias Symbol
Gene Class
Seed Pigment
Predicted Function
1-Deoxyxylulose 5-Phosphate Synthase
Function Details
Biosynthesis of isoprenoids required for normal chloroplast development
Gene Evidence
Molecular Complementation
P. Mandel (1 allele)
Border Recovery
P. Mandel (1 allele)
Double Border Recovery
Meinke / Syngenta (1 allele)
Database Release
March, 2002
Predicted Sequences
Gene:
3659 nucleotides
mRNA:
2776 nucleotides
Protein:
717 amino acids
cDNA Status
FLcDNA Available:
Y14333
Top BLAST Hits
Arabidopsis
:
AT3G21500.1 (77%)
Plant ESTs:
Brassica napus (95%)
Model Genomes:
Escherichia coli (47%)
Subcellular Localization
TargetP
Targeted to Chloroplasts
SUBA
mRNA Expression Data
NASCArray Spot History for
245281_at
Mutant Information
Allele Symbol
cla-1S
Mutant Class
Seed Pigment
Source of Mutant
Meinke / Syngenta
Mutant Line Number
1055
Ecotype
Columbia
Genetic Background
ABRC Stock
CS16003
Mutagen Treatment
T-DNA
Insertion Mutant
Yes
Details
Flanking Sequence
Location of Mutation
Terminal Phenotype
Pigment Defective
Nomarski Phenotype
Allelism Evidence
Reference Allele
Database Release
March, 2002
Seed Color
White to Pale Yellow
Embryo Color
White to Pale Yellow
Percent Mutant Seeds
29.7 %
Chi - Square
10.2
Seeds Counted
876
Percent Top Half
50.0 %
Chi - Square
<0.1
Average Seed Length
Average Embryo Length