SeedGenes Profile: CLA

Gene Information Gene Symbol CLA Chromosome Locus At4g15560   Alleles in Database 2   See List OR Show All Identity Confidence Confirmed Alias Symbol   Gene Class Seed Pigment Predicted Function 1-Deoxyxylulose 5-Phosphate Synthase Function Details Biosynthesis of isoprenoids required for normal chloroplast development Gene Evidence Molecular Complementation P. Mandel (1 allele) Border Recovery P. Mandel (1 allele) Double Border Recovery Meinke / Syngenta (1 allele) Database Release March, 2002 Predicted Sequences Gene: 3659 nucleotides mRNA: 2776 nucleotides Protein:   717 amino acids cDNA Status FLcDNA Available: Y14333 Top BLAST Hits Arabidopsis: AT3G21500.1 (77%) Plant ESTs: Brassica napus (95%) Model Genomes:   Escherichia coli (47%) Subcellular Localization TargetP Targeted to Chloroplasts SUBA mRNA Expression Data NASCArray Spot History for 245281_at

Mutant Information Allele Symbol cla-1S cla-1 Mutant Class Seed Pigment Seed Pigment Source of Mutant Meinke / Syngenta Mandel / Feldmann Mutant Line Number 1055   Ecotype Columbia Wassilewskija Genetic Background     ABRC Stock CS16003   Mutagen Treatment T-DNA T-DNA Insertion Mutant Yes   Details Yes   Details Flanking Sequence     Location of Mutation   Exon 3 Terminal Phenotype Pigment Defective Pigment Defective Nomarski Phenotype Allelism Evidence Reference Allele Sequence Identity Database Release March, 2002 March, 2002 Seed Color White to Pale Yellow White Embryo Color White to Pale Yellow White Percent Mutant Seeds 29.7 % 25.6 % Chi - Square 10.2 0.2 Seeds Counted 876 1143 Percent Top Half 50.0 % 57.7 % Chi - Square <0.1 6.9 Average Seed Length     Average Embryo Length