OSU Syngenta vbi

SeedGenes Profile: CLPP 5

Gene Information
Gene Symbol CLPP 5
Chromosome Locus At1g02560   tair
Alleles in Database 3   See List OR Show All
Identity Confidence Confirmed
Alias Symbol  
Gene Class Embryo Defective
Predicted Function Chloroplast Clp Protease Subunit
Function Details None
Gene Evidence
Border Recovery
van Wijk / Salk (1 allele)
Border Recovery
van Wijk / SAIL (2 alleles)
Database Release December, 2010
Predicted Sequences
Gene:2250 nucleotides
mRNA: 1341 nucleotides
Protein:  298 amino acids
cDNA Status FLcDNA Available: BX815808
Top BLAST Hits
Arabidopsis: Only self hit
Plant ESTs: Brassica napus (96%)
Model Genomes:  Synechocystis (68%)
Subcellular Localization TargetP Targeted to Chloroplasts
SUBA
mRNA Expression Data NASCArray Spot History for 260912_at
    
Mutant Information
Allele Symbol clpp 5-1clpp 5-2
Mutant Class Embryo DefectiveEmbryo Defective
Source of Mutant van Wijk / Salkvan Wijk / SAIL
Mutant Line Number SALK_007708SAIL_59_E07
Ecotype ColumbiaColumbia
Genetic Background   
ABRC Stock   
Mutagen Treatment T-DNAT-DNA
Insertion Mutant Yes   DetailsYes   Details
Flanking Sequence   
Location of Mutation Exon 4Intron 5
Terminal Phenotype GlobularGlobular
Nomarski Phenotype
Allelism Evidence Reference AlleleSequence Identity
Database Release December, 2010December, 2010
Seed Color   
Embryo Color   
Percent Mutant Seeds   
Chi - Square   
Seeds Counted   
Percent Top Half   
Chi - Square   
Average Seed Length   
Average Embryo Length