OSU Syngenta vbi

SeedGenes Profile: EMB 1644

Gene Information
Gene Symbol EMB 1644
Chromosome Locus At5g27720   tair
Alleles in Database 2   See List OR Show All
Identity Confidence Confirmed
Alias Symbol  
Gene Class Embryo Defective
Predicted Function U6 snRNA Associated Protein (LSm4)
Function Details Component of spliceosome involved in pre-mRNA splicing
Gene Evidence
Double Border Recovery
Meinke / Syngenta (2 alleles)
Database Release March, 2003
Predicted Sequences
Gene:2044 nucleotides
mRNA: 912 nucleotides
Protein:  129 amino acids
cDNA Status FLcDNA Available: AY087911
Top BLAST Hits
Arabidopsis: Only self hit
Plant ESTs: Medicago truncatula (98%)
Model Genomes:  Drosophila melanogaster (82%)
Subcellular Localization TargetP Not Targeted to Cell Compartment
SUBA
mRNA Expression Data NASCArray Spot History for 246741_at
    
Mutant Information
Allele Symbol emb 1644-1
Mutant Class Embryo Defective
Source of Mutant Meinke / Syngenta
Mutant Line Number 50481
Ecotype Columbia
Genetic Background  
ABRC Stock CS16157
Mutagen Treatment T-DNA
Insertion Mutant Yes   Details
Flanking Sequence Details  (Help)
Location of Mutation Exon 1 in 5' UTR
Terminal Phenotype Globular  Details
Nomarski Phenotype   Images
Allelism Evidence Complementation Test; Sequence Identity
Database Release March, 2003
Seed Color White
Embryo Color White
Percent Mutant Seeds 24.5 %
Chi - Square 0.2
Seeds Counted 1046
Percent Top Half 45.7 %
Chi - Square 1.9
Average Seed Length 510 ± 60 µm
Average Embryo Length 40 ± 20 µm