Aug 17, 2018 4:41 PM
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Database Query
SeedGenes Profile: EMB 1644
Gene Information
Gene Symbol
EMB 1644
Chromosome Locus
At5g27720
Alleles in Database
2
See List
OR
Show All
Identity Confidence
Confirmed
Alias Symbol
Gene Class
Embryo Defective
Predicted Function
U6 snRNA Associated Protein (LSm4)
Function Details
Component of spliceosome involved in pre-mRNA splicing
Gene Evidence
Double Border Recovery
Meinke / Syngenta (2 alleles)
Database Release
March, 2003
Predicted Sequences
Gene:
2044 nucleotides
mRNA:
912 nucleotides
Protein:
129 amino acids
cDNA Status
FLcDNA Available:
AY087911
Top BLAST Hits
Arabidopsis
:
Only self hit
Plant ESTs:
Medicago truncatula (98%)
Model Genomes:
Drosophila melanogaster (82%)
Subcellular Localization
TargetP
Not Targeted to Cell Compartment
SUBA
mRNA Expression Data
NASCArray Spot History for
246741_at
Mutant Information
Allele Symbol
emb 1644-2
emb 1644-1
Mutant Class
Embryo Defective
Embryo Defective
Source of Mutant
Meinke / Syngenta
Meinke / Syngenta
Mutant Line Number
32187
50481
Ecotype
Columbia
Columbia
Genetic Background
ABRC Stock
CS16156
CS16157
Mutagen Treatment
T-DNA
T-DNA
Insertion Mutant
Yes
Details
Yes
Details
Flanking Sequence
Details
(Help)
Details
Location of Mutation
Exon 5 to Downstream
Exon 1 in 5' UTR
Terminal Phenotype
Globular
Details
Globular
Details
Nomarski Phenotype
Images
Images
Allelism Evidence
Reference Allele
Complementation Test; Sequence Identity
Database Release
March, 2003
March, 2003
Seed Color
White
White
Embryo Color
White
White
Percent Mutant Seeds
24.0 %
24.5 %
Chi - Square
0.6
0.2
Seeds Counted
1116
1046
Percent Top Half
50.4 %
45.7 %
Chi - Square
<0.1
1.9
Average Seed Length
520 ± 50 µm
510 ± 60 µm
Average Embryo Length
30 ± 20 µm
40 ± 20 µm