Aug 17, 2018 4:33 PM
Home
|
Access Page
|
Database Query
SeedGenes Profile: EMB 2407
Gene Information
Gene Symbol
EMB 2407
Chromosome Locus
At5g60540
Alleles in Database
3
See List
OR
Show All
Identity Confidence
Confirmed
Alias Symbol
PDX 2
(T. Fitzpatrick) Sequence Identity
Gene Class
Embryo Defective
Predicted Function
Imidazoleglycerol-Phosphate Synthase Subunit H; Pyroxidine Amidotransferase
Function Details
Pyroxidine (vitamin B6) biosynthesis
Gene Evidence
Double Border Recovery
Meinke / Syngenta (1 allele)
Border Recovery
Fitzpatrick / Salk (1 allele)
Border Recovery
Fitzpatrick / Riken (1 allele)
Database Release
September, 2003
Predicted Sequences
Gene:
2180 nucleotides
mRNA:
1174 nucleotides
Protein:
255 amino acids
cDNA Status
FLcDNA Available:
AK117313
Top BLAST Hits
Arabidopsis
:
Only self hit
Plant ESTs:
Brassica napus (91%)
Model Genomes:
Neurospora crassa (44%)
Subcellular Localization
TargetP
Targeted to Mitochondria
SUBA
mRNA Expression Data
NASCArray Spot History for
247641_at
Mutant Information
Allele Symbol
emb 2407
Mutant Class
Embryo Defective
Source of Mutant
Meinke / Syngenta
Mutant Line Number
85146
Ecotype
Columbia
Genetic Background
ABRC Stock
CS16214
Mutagen Treatment
T-DNA
Insertion Mutant
Yes
Details
Flanking Sequence
Details
(Help)
Location of Mutation
Exon 2
Terminal Phenotype
Cotyledon
Details
Nomarski Phenotype
Images
Allelism Evidence
Reference Allele
Database Release
September, 2003
Seed Color
White to Pale Yellow
Embryo Color
White to Pale Yellow
Percent Mutant Seeds
26.2 %
Chi - Square
0.8
Seeds Counted
1086
Percent Top Half
51.1 %
Chi - Square
0.1
Average Seed Length
490 ± 70 µm
Average Embryo Length
160 ± 90 µm