Aug 17, 2018 4:33 PM
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Database Query
SeedGenes Profile: EMB 2407
Gene Information
Gene Symbol
EMB 2407
Chromosome Locus
At5g60540
Alleles in Database
3
See List
OR
Show All
Identity Confidence
Confirmed
Alias Symbol
PDX 2
(T. Fitzpatrick) Sequence Identity
Gene Class
Embryo Defective
Predicted Function
Imidazoleglycerol-Phosphate Synthase Subunit H; Pyroxidine Amidotransferase
Function Details
Pyroxidine (vitamin B6) biosynthesis
Gene Evidence
Double Border Recovery
Meinke / Syngenta (1 allele)
Border Recovery
Fitzpatrick / Salk (1 allele)
Border Recovery
Fitzpatrick / Riken (1 allele)
Database Release
September, 2003
Predicted Sequences
Gene:
2180 nucleotides
mRNA:
1174 nucleotides
Protein:
255 amino acids
cDNA Status
FLcDNA Available:
AK117313
Top BLAST Hits
Arabidopsis
:
Only self hit
Plant ESTs:
Brassica napus (91%)
Model Genomes:
Neurospora crassa (44%)
Subcellular Localization
TargetP
Targeted to Mitochondria
SUBA
mRNA Expression Data
NASCArray Spot History for
247641_at
Mutant Information
Allele Symbol
pdx 2-1
Mutant Class
Embryo Defective
Source of Mutant
Fitzpatrick / Salk
Mutant Line Number
SALK_072168
Ecotype
Columbia
Genetic Background
ABRC Stock
Mutagen Treatment
T-DNA
Insertion Mutant
Yes
Details
Flanking Sequence
Location of Mutation
Intron 1
Terminal Phenotype
Globular
Nomarski Phenotype
Allelism Evidence
Sequence Identity
Database Release
October, 2007
Seed Color
Embryo Color
Percent Mutant Seeds
Chi - Square
Seeds Counted
Percent Top Half
Chi - Square
Average Seed Length
Average Embryo Length