Aug 17, 2018 4:33 PM
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SeedGenes Profile: EMB 2754
Gene Information
Gene Symbol
EMB 2754
Chromosome Locus
At4g36630
Alleles in Database
1
Identity Confidence
Not Confirmed
Alias Symbol
Gene Class
Embryo Defective
Predicted Function
Putative Vacuolar Protein (VPS39)
Function Details
Proposed role in vacuolar protein sorting
Gene Evidence
Double Border Recovery
Meinke / Syngenta (1 allele)
Database Release
March, 2004
Predicted Sequences
Gene:
4790 nucleotides
mRNA:
3352 nucleotides
Protein:
998 amino acids
cDNA Status
FLcDNA Available:
AY099879
Top BLAST Hits
Arabidopsis
:
Only self hit
Plant ESTs:
Medicago truncatula (65%)
Model Genomes:
Danio rerio (27%)
Subcellular Localization
TargetP
Not Targeted to Cell Compartment
SUBA
mRNA Expression Data
NASCArray Spot History for
246232_at
Mutant Information
Allele Symbol
emb 2754
Mutant Class
Embryo Defective
Source of Mutant
Meinke / Syngenta
Mutant Line Number
120531
Ecotype
Columbia
Genetic Background
qrt
ABRC Stock
CS24057
Mutagen Treatment
T-DNA
Insertion Mutant
Yes
Details
Flanking Sequence
Details
(Help)
Location of Mutation
Exon 1
Terminal Phenotype
Cotyledon
Details
Nomarski Phenotype
Allelism Evidence
Reference Allele
Database Release
March, 2004
Seed Color
Pale Yellow
Embryo Color
Pale Yellow
Percent Mutant Seeds
20.5 %
Chi - Square
10.1
Seeds Counted
928
Percent Top Half
58.9 %
Chi - Square
6.1
Average Seed Length
510 ± 60 µm
Average Embryo Length
140 ± 150 µm