Aug 17, 2018 4:33 PM
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Database Query
SeedGenes Profile: EMB 2788
Gene Information
Gene Symbol
EMB 2788
Chromosome Locus
At4g27010
Alleles in Database
2
See List
OR
Show All
Identity Confidence
Confirmed
Alias Symbol
Gene Class
Embryo Defective
Predicted Function
Uncertain
Function Details
Weak similarity to ribosome biogenesis factor (URB1)
Gene Evidence
Border Recovery
Meinke / Salk (2 alleles)
Database Release
December, 2010
Predicted Sequences
Gene:
9831 nucleotides
mRNA:
7692 nucleotides
Protein:
2563 amino acids
cDNA Status
Unknown
Top BLAST Hits
Arabidopsis
:
AT1G72270.1 (71%)
Plant ESTs:
Vitis vinifera (45%)
Model Genomes:
None
Subcellular Localization
TargetP
Not Targeted to Cell Compartment
SUBA
mRNA Expression Data
NASCArray Spot History for
253942_at
Mutant Information
Allele Symbol
emb 2788-1
emb 2788-2
Mutant Class
Embryo Defective
Embryo Defective
Source of Mutant
Meinke / Salk
Meinke / Salk
Mutant Line Number
SALK_007803
SALK_002007
Ecotype
Columbia
Columbia
Genetic Background
ABRC Stock
Mutagen Treatment
T-DNA
T-DNA
Insertion Mutant
Yes
Details
Yes
Details
Flanking Sequence
Location of Mutation
Exon 1
Exon 2
Terminal Phenotype
Cotyledon
Details
Cotyledon
Details
Nomarski Phenotype
Images
Images
Allelism Evidence
Reference Allele
Complementation Test; Sequence Identity
Database Release
December, 2010
December, 2010
Seed Color
Pale Green
Pale Green
Embryo Color
Pale Green
Pale Green
Percent Mutant Seeds
27.2 %
27.7 %
Chi - Square
0.9
1.2
Seeds Counted
327
310
Percent Top Half
41.6 %
51.2 %
Chi - Square
2.5
<0.1
Average Seed Length
520 ± 40 µm
540 ± 30 µm
Average Embryo Length
280 ± 90 µm
330 ± 110 µm