OSU Syngenta vbi

SeedGenes Profile: EMB 2788

Gene Information
Gene Symbol EMB 2788
Chromosome Locus At4g27010   tair
Alleles in Database 2   See List OR Show All
Identity Confidence Confirmed
Alias Symbol  
Gene Class Embryo Defective
Predicted Function Uncertain
Function Details Weak similarity to ribosome biogenesis factor (URB1)
Gene Evidence
Border Recovery
Meinke / Salk (2 alleles)
Database Release December, 2010
Predicted Sequences
Gene:9831 nucleotides
mRNA: 7692 nucleotides
Protein:  2563 amino acids
cDNA Status Unknown
Top BLAST Hits
Arabidopsis: AT1G72270.1 (71%)
Plant ESTs: Vitis vinifera (45%)
Model Genomes:   None
Subcellular Localization TargetP Not Targeted to Cell Compartment
mRNA Expression Data NASCArray Spot History for 253942_at
Mutant Information
Allele Symbol emb 2788-1emb 2788-2
Mutant Class Embryo DefectiveEmbryo Defective
Source of Mutant Meinke / SalkMeinke / Salk
Mutant Line Number SALK_007803SALK_002007
Ecotype ColumbiaColumbia
Genetic Background   
ABRC Stock   
Mutagen Treatment T-DNAT-DNA
Insertion Mutant Yes   DetailsYes   Details
Flanking Sequence   
Location of Mutation Exon 1Exon 2
Terminal Phenotype Cotyledon  DetailsCotyledon  Details
Nomarski Phenotype   Images  Images
Allelism Evidence Reference AlleleComplementation Test; Sequence Identity
Database Release December, 2010December, 2010
Seed Color Pale GreenPale Green
Embryo Color Pale GreenPale Green
Percent Mutant Seeds 27.2 %27.7 %
Chi - Square 0.91.2
Seeds Counted 327310
Percent Top Half 41.6 %51.2 %
Chi - Square 2.5<0.1
Average Seed Length 520 ± 40 µm540 ± 30 µm
Average Embryo Length 280 ± 90 µm330 ± 110 µm