OSU Syngenta vbi

SeedGenes Profile: EMB 3113

Gene Information
Gene Symbol EMB 3113
Chromosome Locus At2g33800   tair
Alleles in Database 2   See List OR Show All
Identity Confidence Confirmed
Alias Symbol  
Gene Class Embryo Defective
Predicted Function Chloroplast 30S Ribosomal Protein S5
Function Details Translation in chloroplast
Gene Evidence
Border Recovery
Myouga / Riken (1 allele)
Border Recovery
Meinke / Salk (1 allele)
Database Release December, 2010
Predicted Sequences
Gene:1659 nucleotides
mRNA: 1143 nucleotides
Protein:  303 amino acids
cDNA Status FLcDNA Available: BX819190
Top BLAST Hits
Arabidopsis: Only self hit
Plant ESTs: Brassica napus (89%)
Model Genomes:   None
Subcellular Localization TargetP Targeted to Chloroplasts
SUBA
mRNA Expression Data NASCArray Spot History for 267435_at
    
Mutant Information
Allele Symbol emb 3113-1emb 3113-2
Mutant Class Embryo DefectiveSeed Pigment
Source of Mutant Myouga / RikenMeinke / Salk
Mutant Line Number RATM11-2624-1SALK_095863
Ecotype NossenColumbia
Genetic Background   
ABRC Stock   
Mutagen Treatment TransposonT-DNA
Insertion Mutant Yes   DetailsYes   Details
Flanking Sequence   
Location of Mutation Exon 25' UTR
Terminal Phenotype PreglobularPigment Defective
Nomarski Phenotype
Allelism Evidence Reference AlleleComplementation Test; Sequence Identity
Database Release December, 2010December, 2010
Seed Color   
Embryo Color   
Percent Mutant Seeds 22.6 %24.6 %
Chi - Square 1.4<0.1
Seeds Counted 455483
Percent Top Half   
Chi - Square   
Average Seed Length   
Average Embryo Length