SeedGenes Profile: PDE 129

Gene Information Gene Symbol PDE 129 Chromosome Locus At5g62790   Alleles in Database 3   See List OR Show All Identity Confidence Confirmed Alias Symbol DXR (L.J. Qu) Sequence Identity Gene Class Seed Pigment Predicted Function 1-Deoxyxylulose 5-Phosphate Reductoisomerase Function Details Biosynthesis of isoprenoids required for normal chloroplast development Gene Evidence Border Recovery Qu / GABI (1 allele) Double Border Recovery Meinke / Syngenta (2 alleles) Database Release March, 2002 Predicted Sequences Gene: 3315 nucleotides mRNA: 1814 nucleotides Protein:   477 amino acids cDNA Status FLcDNA Available: AY054682 Top BLAST Hits Arabidopsis: Only self hit Plant ESTs: Brassica napus (94%) Model Genomes:   Synechocystis (65%) Subcellular Localization TargetP Targeted to Chloroplasts SUBA mRNA Expression Data NASCArray Spot History for 247401_at

Mutant Information Allele Symbol dxr Mutant Class Seed Pigment Source of Mutant Qu / GABI Mutant Line Number GABI_215C01 Ecotype Columbia Genetic Background   ABRC Stock   Mutagen Treatment T-DNA Insertion Mutant Yes   Details Flanking Sequence   Location of Mutation Exon 7 Terminal Phenotype Pigment Defective Nomarski Phenotype   Allelism Evidence Sequence Identity Database Release December, 2010 Seed Color   Embryo Color   Percent Mutant Seeds   Chi - Square   Seeds Counted   Percent Top Half   Chi - Square   Average Seed Length   Average Embryo Length