SeedGenes Profile: PDE 129

Gene Information Gene Symbol PDE 129 Chromosome Locus At5g62790   Alleles in Database 3   See List OR Show All Identity Confidence Confirmed Alias Symbol DXR (L.J. Qu) Sequence Identity Gene Class Seed Pigment Predicted Function 1-Deoxyxylulose 5-Phosphate Reductoisomerase Function Details Biosynthesis of isoprenoids required for normal chloroplast development Gene Evidence Border Recovery Qu / GABI (1 allele) Double Border Recovery Meinke / Syngenta (2 alleles) Database Release March, 2002 Predicted Sequences Gene: 3315 nucleotides mRNA: 1814 nucleotides Protein:   477 amino acids cDNA Status FLcDNA Available: AY054682 Top BLAST Hits Arabidopsis: Only self hit Plant ESTs: Brassica napus (94%) Model Genomes:   Synechocystis (65%) Subcellular Localization TargetP Targeted to Chloroplasts SUBA mRNA Expression Data NASCArray Spot History for 247401_at

Mutant Information Allele Symbol pde 129-1 Mutant Class Seed Pigment Source of Mutant Meinke / Syngenta Mutant Line Number 4036 Ecotype Columbia Genetic Background   ABRC Stock CS16060 Mutagen Treatment T-DNA Insertion Mutant Yes   Details Flanking Sequence   Location of Mutation   Terminal Phenotype Pigment Defective Nomarski Phenotype   Allelism Evidence Reference Allele Database Release March, 2002 Seed Color White Embryo Color White Percent Mutant Seeds 29.3 % Chi - Square 9.7 Seeds Counted 986 Percent Top Half 52.9 % Chi - Square 1.0 Average Seed Length   Average Embryo Length