Aug 17, 2018 4:33 PM
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Database Query
SeedGenes Profile: PDE 181
Gene Information
Gene Symbol
PDE 181
Chromosome Locus
At3g04870
Alleles in Database
1
Identity Confidence
Not Confirmed
Alias Symbol
Gene Class
Seed Pigment
Predicted Function
Zeta Carotene Desaturase
Function Details
Carotenoid biosynthesis
Gene Evidence
Single Border Recovery
Meinke / Syngenta (1 allele)
Database Release
March, 2002
Predicted Sequences
Gene:
3670 nucleotides
mRNA:
1999 nucleotides
Protein:
558 amino acids
cDNA Status
FLcDNA Available:
AY086144
Top BLAST Hits
Arabidopsis
:
AT4G14210.1 (31%)
Plant ESTs:
Medicago truncatula (84%)
Model Genomes:
Synechocystis (65%)
Subcellular Localization
TargetP
Targeted to Chloroplasts
SUBA
mRNA Expression Data
NASCArray Spot History for
259092_at
Mutant Information
Allele Symbol
pde 181
Mutant Class
Seed Pigment
Source of Mutant
Meinke / Syngenta
Mutant Line Number
13528
Ecotype
Columbia
Genetic Background
ABRC Stock
CS16062
Mutagen Treatment
T-DNA
Insertion Mutant
Yes
Details
Flanking Sequence
Details
(Help)
Location of Mutation
Exon 4
Terminal Phenotype
Pigment Defective
Nomarski Phenotype
Allelism Evidence
Reference Allele
Database Release
March, 2002
Seed Color
Pale Yellow
Embryo Color
Pale Yellow
Percent Mutant Seeds
23.9 %
Chi - Square
0.7
Seeds Counted
1175
Percent Top Half
64.1 %
Chi - Square
22.2
Average Seed Length
Average Embryo Length