Aug 17, 2018 4:33 PM
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Database Query
SeedGenes Profile: PDE 226
Gene Information
Gene Symbol
PDE 226
Chromosome Locus
At4g14210
Alleles in Database
3
See List
OR
Show All
Identity Confidence
Confirmed
Alias Symbol
PDS 3
(TAIR) Sequence Identity
Gene Class
Seed Pigment
Predicted Function
Phytoene Desaturase
Function Details
Carotenoid biosynthesis
Gene Evidence
Double Border Recovery
Meinke / Syngenta (1 allele)
Molecular Complementation
L.J. Qu (1 allele)
Border Recovery
L.J. Qu (1 allele)
Border Recovery
Qu / Salk (1 allele)
Database Release
March, 2002
Predicted Sequences
Gene:
5054 nucleotides
mRNA:
2213 nucleotides
Protein:
566 amino acids
cDNA Status
FLcDNA Available:
AF360196
Top BLAST Hits
Arabidopsis
:
AT3G04870.1 (30%)
Plant ESTs:
Soybean (Glycine max) (81%)
Model Genomes:
Synechocystis (65%)
Subcellular Localization
TargetP
Targeted to Chloroplasts
SUBA
mRNA Expression Data
NASCArray Spot History for
245284_at
Mutant Information
Allele Symbol
pds 3-1
Mutant Class
Seed Pigment
Source of Mutant
LJ Qu
Mutant Line Number
ZHJ070204
Ecotype
Columbia
Genetic Background
ABRC Stock
Mutagen Treatment
T-DNA
Insertion Mutant
Yes
Details
Flanking Sequence
Location of Mutation
Intron 2
Terminal Phenotype
Pigment Defective
Nomarski Phenotype
Allelism Evidence
Sequence Identity
Database Release
December, 2010
Seed Color
Embryo Color
Percent Mutant Seeds
Chi - Square
Seeds Counted
Percent Top Half
Chi - Square
Average Seed Length
Average Embryo Length