SeedGenes Profile: PDE 226

Gene Information Gene Symbol PDE 226 Chromosome Locus At4g14210   Alleles in Database 3   See List OR Show All Identity Confidence Confirmed Alias Symbol PDS 3 (TAIR) Sequence Identity Gene Class Seed Pigment Predicted Function Phytoene Desaturase Function Details Carotenoid biosynthesis Gene Evidence Double Border Recovery Meinke / Syngenta (1 allele) Molecular Complementation L.J. Qu (1 allele) Border Recovery L.J. Qu (1 allele) Border Recovery Qu / Salk (1 allele) Database Release March, 2002 Predicted Sequences Gene: 5054 nucleotides mRNA: 2213 nucleotides Protein:   566 amino acids cDNA Status FLcDNA Available: AF360196 Top BLAST Hits Arabidopsis: AT3G04870.1 (30%) Plant ESTs: Soybean (Glycine max) (81%) Model Genomes:   Synechocystis (65%) Subcellular Localization TargetP Targeted to Chloroplasts SUBA mRNA Expression Data NASCArray Spot History for 245284_at

Mutant Information Allele Symbol pde 226 pds 3-1 pds 3-2 Mutant Class Seed Pigment Seed Pigment Seed Pigment Source of Mutant Meinke / Syngenta LJ Qu Qu / Salk Mutant Line Number 19414 ZHJ070204 SALK_060989 Ecotype Uncertain Columbia Columbia Genetic Background       ABRC Stock CS16064     Mutagen Treatment T-DNA T-DNA T-DNA Insertion Mutant Yes   Details Yes   Details Yes   Details Flanking Sequence Details  (Help)     Location of Mutation Intron 12 Intron 2 Intron 10 Terminal Phenotype Pigment Defective Pigment Defective Pigment Defective Nomarski Phenotype Allelism Evidence Reference Allele Sequence Identity Sequence Identity Database Release March, 2002 December, 2010 December, 2010 Seed Color White     Embryo Color White     Percent Mutant Seeds 24.0 %     Chi - Square 0.6     Seeds Counted 806     Percent Top Half 53.0 %     Chi - Square 0.3     Average Seed Length       Average Embryo Length