Aug 17, 2018 4:41 PM
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Database Query
SeedGenes Profile: PDE 226
Gene Information
Gene Symbol
PDE 226
Chromosome Locus
At4g14210
Alleles in Database
3
See List
OR
Show All
Identity Confidence
Confirmed
Alias Symbol
PDS 3
(TAIR) Sequence Identity
Gene Class
Seed Pigment
Predicted Function
Phytoene Desaturase
Function Details
Carotenoid biosynthesis
Gene Evidence
Double Border Recovery
Meinke / Syngenta (1 allele)
Molecular Complementation
L.J. Qu (1 allele)
Border Recovery
L.J. Qu (1 allele)
Border Recovery
Qu / Salk (1 allele)
Database Release
March, 2002
Predicted Sequences
Gene:
5054 nucleotides
mRNA:
2213 nucleotides
Protein:
566 amino acids
cDNA Status
FLcDNA Available:
AF360196
Top BLAST Hits
Arabidopsis
:
AT3G04870.1 (30%)
Plant ESTs:
Soybean (Glycine max) (81%)
Model Genomes:
Synechocystis (65%)
Subcellular Localization
TargetP
Targeted to Chloroplasts
SUBA
mRNA Expression Data
NASCArray Spot History for
245284_at
Mutant Information
Allele Symbol
pde 226
pds 3-1
pds 3-2
Mutant Class
Seed Pigment
Seed Pigment
Seed Pigment
Source of Mutant
Meinke / Syngenta
LJ Qu
Qu / Salk
Mutant Line Number
19414
ZHJ070204
SALK_060989
Ecotype
Uncertain
Columbia
Columbia
Genetic Background
ABRC Stock
CS16064
Mutagen Treatment
T-DNA
T-DNA
T-DNA
Insertion Mutant
Yes
Details
Yes
Details
Yes
Details
Flanking Sequence
Details
(Help)
Location of Mutation
Intron 12
Intron 2
Intron 10
Terminal Phenotype
Pigment Defective
Pigment Defective
Pigment Defective
Nomarski Phenotype
Allelism Evidence
Reference Allele
Sequence Identity
Sequence Identity
Database Release
March, 2002
December, 2010
December, 2010
Seed Color
White
Embryo Color
White
Percent Mutant Seeds
24.0 %
Chi - Square
0.6
Seeds Counted
806
Percent Top Half
53.0 %
Chi - Square
0.3
Average Seed Length
Average Embryo Length