OSU Syngenta vbi

SeedGenes Profile: PDE 226

Gene Information
Gene Symbol PDE 226
Chromosome Locus At4g14210   tair
Alleles in Database 3   See List OR Show All
Identity Confidence Confirmed
Alias Symbol PDS 3 (TAIR) Sequence Identity
Gene Class Seed Pigment
Predicted Function Phytoene Desaturase
Function Details Carotenoid biosynthesis
Gene Evidence
Double Border Recovery
Meinke / Syngenta (1 allele)
Molecular Complementation
L.J. Qu (1 allele)
Border Recovery
L.J. Qu (1 allele)
Border Recovery
Qu / Salk (1 allele)
Database Release March, 2002
Predicted Sequences
Gene:5054 nucleotides
mRNA: 2213 nucleotides
Protein:  566 amino acids
cDNA Status FLcDNA Available: AF360196
Top BLAST Hits
Arabidopsis: AT3G04870.1 (30%)
Plant ESTs: Soybean (Glycine max) (81%)
Model Genomes:  Synechocystis (65%)
Subcellular Localization TargetP Targeted to Chloroplasts
SUBA
mRNA Expression Data NASCArray Spot History for 245284_at
    
Mutant Information
Allele Symbol pde 226pds 3-1pds 3-2
Mutant Class Seed PigmentSeed PigmentSeed Pigment
Source of Mutant Meinke / SyngentaLJ QuQu / Salk
Mutant Line Number 19414ZHJ070204SALK_060989
Ecotype UncertainColumbiaColumbia
Genetic Background    
ABRC Stock CS16064  
Mutagen Treatment T-DNAT-DNAT-DNA
Insertion Mutant Yes   DetailsYes   DetailsYes   Details
Flanking Sequence Details  (Help)  
Location of Mutation Intron 12Intron 2Intron 10
Terminal Phenotype Pigment DefectivePigment DefectivePigment Defective
Nomarski Phenotype
Allelism Evidence Reference AlleleSequence IdentitySequence Identity
Database Release March, 2002December, 2010December, 2010
Seed Color White  
Embryo Color White  
Percent Mutant Seeds 24.0 %  
Chi - Square 0.6  
Seeds Counted 806  
Percent Top Half 53.0 %  
Chi - Square 0.3  
Average Seed Length    
Average Embryo Length