SeedGenes Profile: PDE 226

Gene Information Gene Symbol PDE 226 Chromosome Locus At4g14210   Alleles in Database 3   See List OR Show All Identity Confidence Confirmed Alias Symbol PDS 3 (TAIR) Sequence Identity Gene Class Seed Pigment Predicted Function Phytoene Desaturase Function Details Carotenoid biosynthesis Gene Evidence Double Border Recovery Meinke / Syngenta (1 allele) Molecular Complementation L.J. Qu (1 allele) Border Recovery L.J. Qu (1 allele) Border Recovery Qu / Salk (1 allele) Database Release March, 2002 Predicted Sequences Gene: 5054 nucleotides mRNA: 2213 nucleotides Protein:   566 amino acids cDNA Status FLcDNA Available: AF360196 Top BLAST Hits Arabidopsis: AT3G04870.1 (30%) Plant ESTs: Soybean (Glycine max) (81%) Model Genomes:   Synechocystis (65%) Subcellular Localization TargetP Targeted to Chloroplasts SUBA mRNA Expression Data NASCArray Spot History for 245284_at

Mutant Information Allele Symbol pds 3-2 Mutant Class Seed Pigment Source of Mutant Qu / Salk Mutant Line Number SALK_060989 Ecotype Columbia Genetic Background   ABRC Stock   Mutagen Treatment T-DNA Insertion Mutant Yes   Details Flanking Sequence   Location of Mutation Intron 10 Terminal Phenotype Pigment Defective Nomarski Phenotype   Allelism Evidence Sequence Identity Database Release December, 2010 Seed Color   Embryo Color   Percent Mutant Seeds   Chi - Square   Seeds Counted   Percent Top Half   Chi - Square   Average Seed Length   Average Embryo Length