Aug 17, 2018 4:33 PM
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Database Query
SeedGenes Profile: PDE 316
Gene Information
Gene Symbol
PDE 316
Chromosome Locus
At1g63680
Alleles in Database
5
See List
OR
Show All
Identity Confidence
Confirmed
Alias Symbol
APG 13
(K. Shinozaki) Sequence Identity
AtMurE
(H. Takano) Sequence Identity
Gene Class
Seed Pigment
Predicted Function
Similar to Bacterial mur E Protein
Function Details
Diverged from bacterial and moss proteins; Putative role in transcription
Gene Evidence
Border Recovery
Takano / Salk (1 allele)
Border Recovery
Takano / Riken (1 allele)
Border Recovery
Takano / Wisconsin (2 alleles)
Double Border Recovery
Meinke / Syngenta (1 allele)
Database Release
March, 2003
Predicted Sequences
Gene:
2665 nucleotides
mRNA:
2328 nucleotides
Protein:
767 amino acids
cDNA Status
EST Identified
Top BLAST Hits
Arabidopsis
:
Only self hit
Plant ESTs:
Rice (Oryza sativa) (61%)
Model Genomes:
Synechocystis (34%)
Subcellular Localization
TargetP
Targeted to Chloroplasts
SUBA
mRNA Expression Data
NASCArray Spot History for
260292_at
Mutant Information
Allele Symbol
atmurE-2
Mutant Class
Seed Pigment
Source of Mutant
Takano / Riken
Mutant Line Number
RATM13-6090-1
Ecotype
Nossen
Genetic Background
ABRC Stock
Mutagen Treatment
Transposon
Insertion Mutant
Yes
Details
Flanking Sequence
Location of Mutation
Exon 1
Terminal Phenotype
Pigment Defective
Nomarski Phenotype
Allelism Evidence
Sequence Identity
Database Release
December, 2010
Seed Color
Embryo Color
Percent Mutant Seeds
Chi - Square
Seeds Counted
Percent Top Half
Chi - Square
Average Seed Length
Average Embryo Length