OSU Syngenta vbi

SeedGenes Profile: PDE 316

Gene Information
Gene Symbol PDE 316
Chromosome Locus At1g63680   tair
Alleles in Database 5   See List OR Show All
Identity Confidence Confirmed
Alias Symbol APG 13 (K. Shinozaki) Sequence Identity
AtMurE (H. Takano) Sequence Identity
Gene Class Seed Pigment
Predicted Function Similar to Bacterial mur E Protein
Function Details Diverged from bacterial and moss proteins; Putative role in transcription
Gene Evidence
Border Recovery
Takano / Salk (1 allele)
Border Recovery
Takano / Riken (1 allele)
Border Recovery
Takano / Wisconsin (2 alleles)
Double Border Recovery
Meinke / Syngenta (1 allele)
Database Release March, 2003
Predicted Sequences
Gene:2665 nucleotides
mRNA: 2328 nucleotides
Protein:  767 amino acids
cDNA Status EST Identified
Top BLAST Hits
Arabidopsis: Only self hit
Plant ESTs: Rice (Oryza sativa) (61%)
Model Genomes:  Synechocystis (34%)
Subcellular Localization TargetP Targeted to Chloroplasts
mRNA Expression Data NASCArray Spot History for 260292_at
Mutant Information
Allele Symbol pde 316atmurE-1atmurE-2atmurE-3atmurE-4
Mutant Class Seed PigmentSeed PigmentSeed PigmentSeed PigmentSeed Pigment
Source of Mutant Meinke / SyngentaTakano / SalkTakano / RikenTakano / WisconsinTakano / Wisconsin
Mutant Line Number 13763SALK_126518RATM13-6090-1WiscDsLox477-48WiscDsLox311G11
Ecotype ColumbiaColumbiaNossenColumbiaColumbia
Genetic Background      
ABRC Stock CS16226    
Mutagen Treatment T-DNAT-DNATransposonT-DNAT-DNA
Insertion Mutant Yes   DetailsYes   DetailsYes   DetailsYes   DetailsYes   Details
Flanking Sequence Details  (Help)    
Location of Mutation Exon 1 to Intron 2Exon 1Exon 1Exon 1Exon 1
Terminal Phenotype Pigment DefectivePigment DefectivePigment DefectivePigment DefectivePigment Defective
Nomarski Phenotype
Allelism Evidence Reference AlleleSequence IdentitySequence IdentitySequence IdentitySequence Identity
Database Release March, 2003December, 2010December, 2010December, 2010December, 2010
Seed Color White    
Embryo Color White    
Percent Mutant Seeds 25.7 %    
Chi - Square 0.3    
Seeds Counted 1143    
Percent Top Half 46.9 %    
Chi - Square 1.1    
Average Seed Length      
Average Embryo Length