Aug 17, 2018 4:33 PM
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Database Query
SeedGenes Profile: PDE 319
Gene Information
Gene Symbol
PDE 319
Chromosome Locus
At2g24120
Alleles in Database
3
See List
OR
Show All
Identity Confidence
Confirmed
Alias Symbol
SCA 3
(J. Micol) Sequence Identity
Gene Class
Seed Pigment
Predicted Function
Chloroplast DNA-Dependent RNA Polymerase
Function Details
Transcription of chloroplast genes
Gene Evidence
Double Border Recovery
Meinke / Syngenta (1 allele)
Border Recovery
Micol / Salk (2 alleles)
Database Release
September, 2003
Predicted Sequences
Gene:
5727 nucleotides
mRNA:
3536 nucleotides
Protein:
993 amino acids
cDNA Status
FLcDNA Available:
AK229652
Top BLAST Hits
Arabidopsis
:
AT1G68990.1 (59%)
Plant ESTs:
Nicotiana tabacum (71%)
Model Genomes:
Saccharomyces cerevisiae (38%)
Subcellular Localization
TargetP
Targeted to Chloroplasts
SUBA
mRNA Expression Data
NASCArray Spot History for
265991_at
Mutant Information
Allele Symbol
pde 319
Mutant Class
Seed Pigment
Source of Mutant
Meinke / Syngenta
Mutant Line Number
11913
Ecotype
Columbia
Genetic Background
ABRC Stock
CS16229
Mutagen Treatment
T-DNA
Insertion Mutant
Yes
Details
Flanking Sequence
Details
(Help)
Location of Mutation
Exon 2
Terminal Phenotype
Pigment Defective
Nomarski Phenotype
Allelism Evidence
Reference Allele
Database Release
September, 2003
Seed Color
Pale Yellow
Embryo Color
Pale Yellow
Percent Mutant Seeds
25.5 %
Chi - Square
0.1
Seeds Counted
1143
Percent Top Half
50.5 %
Chi - Square
<0.1
Average Seed Length
Average Embryo Length