SeedGenes Profile: PDE 323

Gene Information Gene Symbol PDE 323 Chromosome Locus At2g40930   Alleles in Database 1 Identity Confidence Not Confirmed Alias Symbol UBP5 (J. Callis) Alternate Name Gene Class Seed Pigment Predicted Function Ubiquitin-Specific Protease (UBP5) Function Details Protein degradation Gene Evidence Double Border Recovery Meinke / Syngenta (1 allele) Database Release March, 2004 Predicted Sequences Gene: 6106 nucleotides mRNA: 3305 nucleotides Protein:   924 amino acids cDNA Status FLcDNA Available: AF048705 Top BLAST Hits Arabidopsis: AT4G10570.1 (46%) Plant ESTs: Rice (Oryza sativa) (46%) Model Genomes:   Homo sapiens (35%) Subcellular Localization TargetP Not Targeted to Cell Compartment SUBA mRNA Expression Data NASCArray Spot History for 245100_at

Mutant Information Allele Symbol pde 323 Mutant Class Seed Pigment Source of Mutant Meinke / Syngenta Mutant Line Number 66202 Ecotype Columbia Genetic Background qrt ABRC Stock CS24061 Mutagen Treatment T-DNA Insertion Mutant Yes   Details Flanking Sequence Details  (Help) Location of Mutation Intron 11 Terminal Phenotype Pigment Defective Nomarski Phenotype   Allelism Evidence Reference Allele Database Release March, 2004 Seed Color Pale Green Embryo Color Pale Green Percent Mutant Seeds 23.8 % Chi - Square 0.8 Seeds Counted 1004 Percent Top Half 56.5 % Chi - Square 4.0 Average Seed Length   Average Embryo Length