Aug 17, 2018 4:34 PM
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Database Query
SeedGenes Profile: PDE 325
Gene Information
Gene Symbol
PDE 325
Chromosome Locus
At3g51820
Alleles in Database
2
See List
OR
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Identity Confidence
Confirmed
Alias Symbol
Gene Class
Seed Pigment
Predicted Function
Chlorophyll Synthase (CHLG/ATG4)
Function Details
Last step in chlorophyll biosynthesis
Gene Evidence
Border Recovery
Meinke / Salk (2 alleles)
Database Release
December, 2010
Predicted Sequences
Gene:
3055 nucleotides
mRNA:
1585 nucleotides
Protein:
387 amino acids
cDNA Status
FLcDNA Available:
AY042821
Top BLAST Hits
Arabidopsis
:
Only self hit
Plant ESTs:
Brassica napus (92%)
Model Genomes:
Synechocystis (65%)
Subcellular Localization
TargetP
Targeted to Chloroplasts
SUBA
mRNA Expression Data
NASCArray Spot History for
246308_at
Mutant Information
Allele Symbol
pde 325-1
Mutant Class
Seed Pigment
Source of Mutant
Meinke / Salk
Mutant Line Number
SALK_112733
Ecotype
Columbia
Genetic Background
ABRC Stock
Mutagen Treatment
T-DNA
Insertion Mutant
Yes
Details
Flanking Sequence
Location of Mutation
Exon 6
Terminal Phenotype
Pigment Defective
Details
Nomarski Phenotype
Allelism Evidence
Reference Allele
Database Release
December, 2010
Seed Color
White to Pale Yellow
Embryo Color
White to Pale Yellow
Percent Mutant Seeds
26.4 %
Chi - Square
0.3
Seeds Counted
254
Percent Top Half
46.3 %
Chi - Square
0.4
Average Seed Length
550 ± 0 µm
Average Embryo Length
450 ± 0 µm