Aug 17, 2018 4:34 PM
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Database Query
SeedGenes Profile: RPN 1A
Gene Information
Gene Symbol
RPN 1A
Chromosome Locus
At2g20580
Alleles in Database
3
See List
OR
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Identity Confidence
Confirmed
Alias Symbol
Gene Class
Embryo Defective
Predicted Function
26S Proteasome Subunit
Function Details
Protein degradation and cell cycle progression
Gene Evidence
Phenotypic Reversion
U. Grossniklaus (1 allele)
Border Recovery
Grossniklaus / Sundaresan (1 allele)
Border Recovery
Grossniklaus / Salk (2 alleles)
Database Release
October, 2007
Predicted Sequences
Gene:
5856 nucleotides
mRNA:
3043 nucleotides
Protein:
891 amino acids
cDNA Status
FLcDNA Available:
AF360216
Top BLAST Hits
Arabidopsis
:
AT4G28470.1 (90%)
Plant ESTs:
Tomato (Lycopersicon esculentum) (83%)
Model Genomes:
Homo sapiens (51%)
Subcellular Localization
TargetP
Not Targeted to Cell Compartment
SUBA
mRNA Expression Data
NASCArray Spot History for
263716_at
Mutant Information
Allele Symbol
rpn 1a-2
Mutant Class
Embryo Defective
Source of Mutant
Grossniklaus / Salk
Mutant Line Number
SALK_012604
Ecotype
Columbia
Genetic Background
ABRC Stock
Mutagen Treatment
T-DNA
Insertion Mutant
Yes
Details
Flanking Sequence
Location of Mutation
Exon 2
Terminal Phenotype
Globular
Nomarski Phenotype
Allelism Evidence
Sequence Identity
Database Release
October, 2007
Seed Color
Embryo Color
Percent Mutant Seeds
Chi - Square
Seeds Counted
Percent Top Half
Chi - Square
Average Seed Length
Average Embryo Length