Aug 17, 2018 4:34 PM
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Database Query
SeedGenes Profile: VAR 2
Gene Information
Gene Symbol
VAR 2
Chromosome Locus
At2g30950
Alleles in Database
1
Identity Confidence
Confirmed
Alias Symbol
Gene Class
Seed Pigment
Predicted Function
Chloroplast Homolog of FtsH
Function Details
ATP-dependent zinc metalloprotease postulated to function in photosystem II repair
Gene Evidence
Sequenced Mutant Allele
S. Rodermel (1 allele)
Experimental Data
S. Rodermel (1 allele)
Database Release
March, 2002
Predicted Sequences
Gene:
2899 nucleotides
mRNA:
2333 nucleotides
Protein:
695 amino acids
cDNA Status
FLcDNA Available:
AF135189
Top BLAST Hits
Arabidopsis
:
AT1G06430.1 (89%)
Plant ESTs:
Brassica napus (89%)
Model Genomes:
Synechocystis (64%)
Subcellular Localization
TargetP
Targeted to Chloroplasts
SUBA
mRNA Expression Data
NASCArray Spot History for
267196_at
Mutant Information
Allele Symbol
var 2-1
Mutant Class
Seed Pigment
Source of Mutant
S. Rodermel
Mutant Line Number
Ecotype
Columbia
Genetic Background
ABRC Stock
Mutagen Treatment
EMS
Insertion Mutant
No
Flanking Sequence
Location of Mutation
Exon 5
Terminal Phenotype
Pigment Defective
Nomarski Phenotype
Allelism Evidence
Reference Allele
Database Release
March, 2002
Seed Color
Pale Green
Embryo Color
Pale Green
Percent Mutant Seeds
22.4 %
Chi - Square
4.4
Seeds Counted
1207
Percent Top Half
46.7 %
Chi - Square
9.8
Average Seed Length
Average Embryo Length