OSU Syngenta vbi

SeedGenes Profile: AGY 1

Gene Information
Gene Symbol AGY 1
Chromosome Locus At4g01800   tair
Alleles in Database 2   See List OR Show All
Identity Confidence Confirmed
Alias Symbol  
Gene Class Seed Pigment
Predicted Function Thylakoid Protein Translocase (cpSecA)
Function Details Protein transport
Gene Evidence
Border Recovery
Wang / Salk (1 allele)
Border Recovery
(1 allele)
Database Release December, 2010
Predicted Sequences
Gene:5410 nucleotides
mRNA: 3273 nucleotides
Protein:  1022 amino acids
cDNA Status EST Identified
Top BLAST Hits
Arabidopsis: AT1G21650.1 (42%)
Plant ESTs: Rice (Oryza sativa) (85%)
Model Genomes:  Synechocystis (58%)
Subcellular Localization TargetP Targeted to Chloroplasts
mRNA Expression Data NASCArray Spot History for 255540_at
Mutant Information
Allele Symbol agy 1-1agy 1-2
Mutant Class Seed PigmentSeed Pigment
Source of Mutant Wang / Salk
Mutant Line Number SALK_063371 
Ecotype ColumbiaColumbia
Genetic Background   
ABRC Stock   
Mutagen Treatment T-DNAT-DNA
Insertion Mutant Yes   DetailsYes   Details
Flanking Sequence   
Location of Mutation Exon 5Exon 3
Terminal Phenotype Pigment DefectivePigment Defective
Nomarski Phenotype
Allelism Evidence Reference AlleleComplementation Test; Sequence Identity
Database Release December, 2010December, 2010
Seed Color   
Embryo Color   
Percent Mutant Seeds   
Chi - Square   
Seeds Counted   
Percent Top Half   
Chi - Square   
Average Seed Length   
Average Embryo Length