OSU Syngenta vbi

SeedGenes Profile: APG 3

Gene Information
Gene Symbol APG 3
Chromosome Locus At3g62910   tair
Alleles in Database 3   See List OR Show All
Identity Confidence Confirmed
Alias Symbol  
Gene Class Seed Pigment
Predicted Function Translation Releasing Factor RF-1
Function Details Translation in cytoplasm
Gene Evidence
Single Border Recovery
Meinke / Syngenta (1 allele)
Border Recovery
Meinke / Syngenta (2 alleles)
Database Release September, 2002
Predicted Sequences
Gene:2874 nucleotides
mRNA: 1417 nucleotides
Protein:  422 amino acids
cDNA Status FLcDNA Available: AY090253
Top BLAST Hits
Arabidopsis: AT2G47020.1 (40%)
Plant ESTs: Lotus japonicus (79%)
Model Genomes:  Synechocystis (59%)
Subcellular Localization TargetP Targeted to Chloroplasts
SUBA
mRNA Expression Data NASCArray Spot History for 251193_at
    
Mutant Information
Allele Symbol apg 3-2Sapg 3-3Sapg 3-1S
Mutant Class Seed PigmentSeed PigmentSeed Pigment
Source of Mutant Meinke / SyngentaMeinke / SyngentaMeinke / Syngenta
Mutant Line Number 8357899036125189
Ecotype ColumbiaColumbiaColumbia
Genetic Background    
ABRC Stock CS16117CS16118 
Mutagen Treatment T-DNAT-DNAT-DNA
Insertion Mutant Yes   DetailsYes   DetailsYes   Details
Flanking Sequence   Details  (Help)
Location of Mutation   Intron 10
Terminal Phenotype Pigment DefectivePigment DefectivePigment Defective
Nomarski Phenotype
Allelism Evidence Reference AlleleComplementation Test; Sequence IdentityComplementation Test; Sequence Identity
Database Release September, 2002September, 2002September, 2002
Seed Color Pale YellowWhite 
Embryo Color Pale YellowWhite 
Percent Mutant Seeds 25.2 %27.2 % 
Chi - Square <0.12.9 
Seeds Counted 11591144 
Percent Top Half 48.6 %52.7 % 
Chi - Square 0.20.9 
Average Seed Length    
Average Embryo Length