SeedGenes Profile: EMB 3146

Gene Information Gene Symbol EMB 3146 Chromosome Locus At1g12410   Alleles in Database 3   See List OR Show All Identity Confidence Confirmed Alias Symbol CLPR 2 (K. van Wijk) Sequence Identity Gene Class Embryo Defective Predicted Function Chloroplast Clp Protease Proteolytic Subunit Function Details None Gene Evidence Border Recovery van Wijk / SAIL (1 allele) Border Recovery Myouga / Salk (2 alleles) Database Release December, 2010 Predicted Sequences Gene: 2095 nucleotides mRNA: 1079 nucleotides Protein:   279 amino acids cDNA Status FLcDNA Available: AY057617 Top BLAST Hits Arabidopsis: Only self hit Plant ESTs: Brassica napus (94%) Model Genomes:   Synechocystis (47%) Subcellular Localization TargetP Targeted to Chloroplasts SUBA mRNA Expression Data NASCArray Spot History for 259521_at

Mutant Information Allele Symbol emb 3146-1 emb 3146-2 clpr 2-3 Mutant Class Embryo Defective Embryo Defective Embryo Defective Source of Mutant Meinke / Salk Meinke / Salk van Wijk / SAIL Mutant Line Number SALK_016774 SALK_118775 SAIL_98_C01 Ecotype Columbia Columbia Columbia Genetic Background       ABRC Stock       Mutagen Treatment T-DNA T-DNA T-DNA Insertion Mutant Yes   Details Yes   Details Yes   Details Flanking Sequence       Location of Mutation Exon 2 Exon 5 Intron 6 Terminal Phenotype Cotyledon Cotyledon Cotyledon Nomarski Phenotype Allelism Evidence Reference Allele Complementation Test; Sequence Identity Complementation Test; Sequence Identity Database Release December, 2010 December, 2010 December, 2010 Seed Color       Embryo Color       Percent Mutant Seeds       Chi - Square       Seeds Counted       Percent Top Half       Chi - Square       Average Seed Length       Average Embryo Length