Aug 17, 2018 4:32 PM
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Database Query
SeedGenes Profile: CH 42
Gene Information
Gene Symbol
CH 42
Chromosome Locus
At4g18480
Alleles in Database
2
See List
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Identity Confidence
Confirmed
Alias Symbol
PDE 314
(D. Meinke) Alternate Name
Gene Class
Seed Pigment
Predicted Function
Magnesium Chelatase (CHLI)
Function Details
First committed step in chlorophyll biosynthesis; Insertion of magnesium into protoporphyrin IX
Gene Evidence
Sequenced Mutant Allele
B. Pogson (1 allele)
Double Border Recovery
Meinke / Syngenta (1 allele)
Database Release
September, 2002
Predicted Sequences
Gene:
1798 nucleotides
mRNA:
1608 nucleotides
Protein:
424 amino acids
cDNA Status
FLcDNA Available:
AY093192
Top BLAST Hits
Arabidopsis
:
AT5G45930.1 (83%)
Plant ESTs:
Brassica napus (94%)
Model Genomes:
Synechocystis (73%)
Subcellular Localization
TargetP
Targeted to Chloroplasts
SUBA
mRNA Expression Data
NASCArray Spot History for
254623_at
Mutant Information
Allele Symbol
ch 42-1S
Mutant Class
Seed Pigment
Source of Mutant
Meinke / Syngenta
Mutant Line Number
99807
Ecotype
Columbia
Genetic Background
ABRC Stock
CS16119
Mutagen Treatment
T-DNA
Insertion Mutant
Yes
Details
Flanking Sequence
Details
(Help)
Location of Mutation
Intron 2
Terminal Phenotype
Pigment Defective
Nomarski Phenotype
Allelism Evidence
Sequence Identity
Database Release
September, 2002
Seed Color
Pale Yellow
Embryo Color
Pale Yellow
Percent Mutant Seeds
23.8 %
Chi - Square
0.7
Seeds Counted
952
Percent Top Half
49.8 %
Chi - Square
<0.1
Average Seed Length
Average Embryo Length