OSU Syngenta vbi

SeedGenes Profile: EMB 2728

Gene Information
Gene Symbol EMB 2728
Chromosome Locus At5g61410   tair
Alleles in Database 2   See List OR Show All
Identity Confidence Confirmed
Alias Symbol RPE (P. Abad) Alternate Name
Gene Class Embryo Defective
Predicted Function Ribulose-5-Phosphate-3-Epimerase
Function Details Role in Calvin cycle and oxidative pentose phosphate pathway
Gene Evidence
Single Border Recovery
Meinke / Syngenta (1 allele)
Double Border Recovery
Meinke / Syngenta (1 allele)
Database Release September, 2002
Predicted Sequences
Gene:2500 nucleotides
mRNA: 1408 nucleotides
Protein:  281 amino acids
cDNA Status FLcDNA Available: AY045855
Top BLAST Hits
Arabidopsis: Only self hit
Plant ESTs: Brassica napus (92%)
Model Genomes:  Synechocystis (68%)
Subcellular Localization TargetP Targeted to Chloroplasts
SUBA
mRNA Expression Data NASCArray Spot History for 247523_at
    
Mutant Information
Allele Symbol emb 2728-2
Mutant Class Embryo Defective
Source of Mutant Meinke / Syngenta
Mutant Line Number 69756
Ecotype Columbia
Genetic Background qrt
ABRC Stock CS16136
Mutagen Treatment T-DNA
Insertion Mutant Yes   Details
Flanking Sequence Details  (Help)
Location of Mutation 5' UTR to Intron 1
Terminal Phenotype Cotyledon  Details
Nomarski Phenotype   Images
Allelism Evidence Complementation Test; Sequence Identity
Database Release September, 2002
Seed Color Pale Yellow
Embryo Color Pale Yellow
Percent Mutant Seeds 25.3 %
Chi - Square <0.1
Seeds Counted 1137
Percent Top Half 52.1 %
Chi - Square 0.5
Average Seed Length 490 ± 40 µm
Average Embryo Length 330 ± 80 µm