OSU Syngenta vbi

SeedGenes Profile: EMB 2728

Gene Information
Gene Symbol EMB 2728
Chromosome Locus At5g61410   tair
Alleles in Database 2   See List OR Show All
Identity Confidence Confirmed
Alias Symbol RPE (P. Abad) Alternate Name
Gene Class Embryo Defective
Predicted Function Ribulose-5-Phosphate-3-Epimerase
Function Details Role in Calvin cycle and oxidative pentose phosphate pathway
Gene Evidence
Single Border Recovery
Meinke / Syngenta (1 allele)
Double Border Recovery
Meinke / Syngenta (1 allele)
Database Release September, 2002
Predicted Sequences
Gene:2500 nucleotides
mRNA: 1408 nucleotides
Protein:  281 amino acids
cDNA Status FLcDNA Available: AY045855
Top BLAST Hits
Arabidopsis: Only self hit
Plant ESTs: Brassica napus (92%)
Model Genomes:  Synechocystis (68%)
Subcellular Localization TargetP Targeted to Chloroplasts
mRNA Expression Data NASCArray Spot History for 247523_at
Mutant Information
Allele Symbol emb 2728-1emb 2728-2
Mutant Class Embryo DefectiveEmbryo Defective
Source of Mutant Meinke / SyngentaMeinke / Syngenta
Mutant Line Number 4990369756
Ecotype ColumbiaColumbia
Genetic Background  qrt
ABRC Stock  CS16136
Mutagen Treatment T-DNAT-DNA
Insertion Mutant Yes   DetailsYes   Details
Flanking Sequence Details  (Help)Details
Location of Mutation Upstream5' UTR to Intron 1
Terminal Phenotype Not AvailableCotyledon  Details
Nomarski Phenotype   Images
Allelism Evidence Reference AlleleComplementation Test; Sequence Identity
Database Release September, 2002September, 2002
Seed Color  Pale Yellow
Embryo Color  Pale Yellow
Percent Mutant Seeds  25.3 %
Chi - Square  <0.1
Seeds Counted  1137
Percent Top Half  52.1 %
Chi - Square  0.5
Average Seed Length  490 ± 40 µm
Average Embryo Length  330 ± 80 µm