OSU Syngenta vbi

SeedGenes Profile: EMB 3123

Gene Information
Gene Symbol EMB 3123
Chromosome Locus At3g27750   tair
Alleles in Database 2   See List OR Show All
Identity Confidence Confirmed
Alias Symbol  
Gene Class Embryo Defective
Predicted Function Uncertain
Function Details VPS9 domain protein
Gene Evidence
Border Recovery
Myouga / Riken (1 allele)
Border Recovery
Meinke / Salk (1 allele)
Database Release December, 2010
Predicted Sequences
Gene:1067 nucleotides
mRNA: 1067 nucleotides
Protein:  222 amino acids
cDNA Status FLcDNA Available: AF375402
Top BLAST Hits
Arabidopsis: Only self hit
Plant ESTs: Brassica napus (71%)
Model Genomes:   None
Subcellular Localization TargetP Targeted to Chloroplasts
SUBA
mRNA Expression Data NASCArray Spot History for 258232_at
    
Mutant Information
Allele Symbol emb 3123-1emb 3123-2
Mutant Class Embryo DefectiveSeed Pigment
Source of Mutant Myouga / RikenMeinke / Salk
Mutant Line Number RATM12-5139-1SALK_140334
Ecotype NossenColumbia
Genetic Background   
ABRC Stock   
Mutagen Treatment TransposonT-DNA
Insertion Mutant Yes   DetailsYes   Details
Flanking Sequence   
Location of Mutation Exon 1Exon 1
Terminal Phenotype CotyledonPigment Defective
Nomarski Phenotype
Allelism Evidence Reference AlleleComplementation Test; Sequence Identity
Database Release December, 2010December, 2010
Seed Color   
Embryo Color   
Percent Mutant Seeds 26.0 %21.2 %
Chi - Square 0.52.4
Seeds Counted 864321
Percent Top Half   
Chi - Square   
Average Seed Length   
Average Embryo Length